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AT4G01200.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G33320.1); Has 277 Blast hits to 277 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX6AeggNOG:ENOG410Z4Q6EMBL:AL161491EMBL:AY080883
EMBL:AY114050EMBL:CP002687EnsemblPlants:AT4G01200EnsemblPlants:AT4G01200.1
entrez:828043Gene3D:2.60.40.150GeneID:828043Gramene:AT4G01200.1
hmmpanther:PTHR32246hmmpanther:PTHR32246:SF31HOGENOM:HOG000153213InterPro:IPR000008
KEGG:ath:AT4G01200OMA:FHGVLNIPfam:PF00168Pfscan:PS50004
PhylomeDB:Q9M148PIR:G85015PROSITE:PS50004Proteomes:UP000006548
RefSeq:NP_192029.1SMART:SM00239SUPFAM:SSF49562TAIR:AT4G01200
UniGene:At.34467UniProt:Q9M148
Coordinates (TAIR10) chr4:-:506783..507535
Molecular Weight (calculated) 27370.60 Da
IEP (calculated) 9.54
GRAVY (calculated) -0.32
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MEETQVLEIN LISAQGLKEP TGKLRRLQTY ASVWVDSSSK LRTRIDRIGS ENPIWNDKFV FQVSPEFLSS ETSGVSIEIY AVGYLRDHLI GTVRFLVSNF
101: LPTAAVKVPS LVALQIRRPS GKFHGVLNIA AMVMDASELP ADFFKSVQEI RRSRKMRKSR SAVSSSENGS ADDGESSKEN SVCGSVNFSD DGTDSTASSP
201: MPSPLRDWNA VRNLAGKNHV RSSSDGGGLM CCFLMKSSGM LPPRRKMTDG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)