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AT4G21480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sugar transporter protein 12
Curator
Summary (TAIR10)
Putative sugar transporter. Expressed in nematode-induced root syncytia.
Computational
Description (TAIR10)
sugar transporter protein 12 (STP12); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: response to nematode; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter 1 (TAIR:AT1G11260.1); Has 29334 Blast hits to 28788 proteins in 2015 species: Archae - 490; Bacteria - 14513; Metazoa - 3914; Fungi - 6644; Plants - 2469; Viruses - 2; Other Eukaryotes - 1302 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-619-MONOMEReggNOG:ENOG410XNQKeggNOG:KOG0254EMBL:AJ344333
EMBL:AL022603EMBL:AL161555EMBL:CP002687EnsemblPlants:AT4G21480
EnsemblPlants:AT4G21480.1entrez:828233GeneID:828233Genevisible:O65413
GO:GO:0008643GO:GO:0015293GO:GO:0016021GO:GO:0022891
Gramene:AT4G21480.1hmmpanther:PTHR23500hmmpanther:PTHR23500:SF55HOGENOM:HOG000202867
InParanoid:O65413InterPro:IPR003663InterPro:IPR005828InterPro:IPR005829
InterPro:IPR020846KEGG:ath:AT4G21480PaxDb:O65413Pfam:O65413
Pfam:PF00083Pfscan:PS50850PhylomeDB:O65413PIR:T05156
PRIDE:O65413PRINTS:PR00171PRO:PR:O65413PROSITE:PS00216
PROSITE:PS00217PROSITE:PS50850ProteinModelPortal:O65413Proteomes:UP000006548
RefSeq:NP_193879.4scanprosite:PS00216scanprosite:PS00217SMR:O65413
STRING:3702.AT4G21480.1SUPFAM:SSF103473TAIR:AT4G21480tair10-symbols:STP12
TIGRfam:TIGR00879TIGRFAMs:TIGR00879TMHMM:TMhelixUniGene:At.2263
UniGene:At.26447UniProt:O65413
Coordinates (TAIR10) chr4:-:11433320..11435284
Molecular Weight (calculated) 55569.90 Da
IEP (calculated) 9.43
GRAVY (calculated) 0.64
Length 502 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSVGIVIGD GKKEYPGKLT LYVTVTCIVA AMGGLIFGYD IGISGGVTTM DSFQQKFFPS VYEKQKKDHD SNQYCRFDSV SLTLFTSSLY LAALCSSLVA
101: SYVTRQFGRK ISMLLGGVLF CAGALLNGFA TAVWMLIVGR LLLGFGIGFT NQSVPLYLSE MAPYKYRGAL NIGFQLSITI GILVANVLNF FFSKISWGWR
201: LSLGGAVVPA LIITVGSLIL PDTPNSMIER GQFRLAEAKL RKIRGVDDID DEINDLIIAS EASKLVEHPW RNLLQRKYRP HLTMAILIPA FQQLTGINVI
301: MFYAPVLFQT IGFGSDAALI SAVVTGLVNV GATVVSIYGV DKWGRRFLFL EGGFQMLISQ VAVAAAIGAK FGVDGTPGVL PKWYAIVVVL FICIYVAAFA
401: WSWGPLGWLV PSEIFPLEIR SAAQSITVSV NMIFTFLIAQ VFLMMLCHLK FGLFIFFAFF VVVMSIFVYL FLPETRGVPI EEMNRVWRSH WYWSKFVDAR
501: RI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)