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AT1G52340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Encodes a cytosolic short-chain dehydrogenase/reductase involved in the conversion of xanthoxin to ABA-aldehyde during ABA biosynthesis. Mutants are insensitive to sucrose and glucose.
Computational
Description (TAIR10)
ABA DEFICIENT 2 (ABA2); CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G51680.1); Has 120353 Blast hits to 120130 proteins in 3578 species: Archae - 983; Bacteria - 78428; Metazoa - 5777; Fungi - 6239; Plants - 2770; Viruses - 5; Other Eukaryotes - 26151 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G52340-MONOMERBioCyc:MetaCyc:AT1G52340-MONOMERBioGrid:26890BRENDA:1.1.1.288
EC:1.1.1.288eggNOG:COG1028eggNOG:KOG0725EMBL:AC037424
EMBL:AY082344EMBL:AY082345EMBL:AY099603EMBL:BT003412
EMBL:CP002684EnsemblPlants:AT1G52340EnsemblPlants:AT1G52340.1entrez:841665
Gene3D:3.40.50.720GeneID:841665Genevisible:Q9C826GO:GO:0004022
GO:GO:0005829GO:GO:0006561GO:GO:0009408GO:GO:0009414
GO:GO:0009688GO:GO:0009750GO:GO:0010115GO:GO:0010182
GO:GO:0010301Gramene:AT1G52340.1gramene_pathway:1.1.1.288gramene_pathway:PWY-695
gramene_plant_reactome:1119374gramene_plant_reactome:6875776hmmpanther:PTHR24322hmmpanther:PTHR24322:SF301
InParanoid:Q9C826IntAct:Q9C826InterPro:IPR002347InterPro:IPR016040
KEGG:ath:AT1G52340KO:K09841OMA:MFLASDNPANTHER:PTHR24322
PaxDb:Q9C826Pfam:PF00106Pfam:Q9C826PhylomeDB:Q9C826
PIR:F96563PRIDE:Q9C826PRINTS:PR00080PRINTS:PR00081
PRO:PR:Q9C826ProteinModelPortal:Q9C826Proteomes:UP000006548Reactome:R-ATH-2142700
Reactome:R-ATH-70895RefSeq:NP_175644.1SABIO-RK:Q9C826SMR:Q9C826
STRING:3702.AT1G52340.1SUPFAM:SSF51735TAIR:AT1G52340tair10-symbols:ABA2
tair10-symbols:ATABA2tair10-symbols:ATSDR1tair10-symbols:GIN1tair10-symbols:ISI4
tair10-symbols:SDR1tair10-symbols:SIS4tair10-symbols:SRE1UniGene:At.37618
UniGene:At.66802UniProt:Q9C826
Coordinates (TAIR10) chr1:-:19489997..19491527
Molecular Weight (calculated) 30274.20 Da
IEP (calculated) 6.23
GRAVY (calculated) 0.11
Length 285 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTNTESSSY SSLPSQRLLG KVALITGGAT GIGESIVRLF HKHGAKVCIV DLQDDLGGEV CKSLLRGESK ETAFFIHGDV RVEDDISNAV DFAVKNFGTL
101: DILINNAGLC GAPCPDIRNY SLSEFEMTFD VNVKGAFLSM KHAARVMIPE KKGSIVSLCS VGGVVGGVGP HSYVGSKHAV LGLTRSVAAE LGQHGIRVNC
201: VSPYAVATKL ALAHLPEEER TEDAFVGFRN FAAANANLKG VELTVDDVAN AVLFLASDDS RYISGDNLMI DGGFTCTNHS FKVFR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)