AT4G00930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : COP1-interacting protein 4.1 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes COP1-interacting protein CIP4.1. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
COP1-interacting protein 4.1 (CIP4.1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: COP1-interacting protein 4 (TAIR:AT5G37190.1); Has 16041 Blast hits to 11566 proteins in 1061 species: Archae - 57; Bacteria - 4473; Metazoa - 4631; Fungi - 1351; Plants - 620; Viruses - 68; Other Eukaryotes - 4841 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:396558..400734 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 122526.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.62 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.83 | ||||||||||||||||||||||||||||
| Length | 1133 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MANRETDSSP EIRCVFVETN LDTRLALPVH KDEIISDFKD KVLKEHKQVF PEIGEINISA MKVKRRREFY HFSESLNVCK AFDGISTDWF MYIDAVRVDK 0101: GKTLAIMDVD QNLELVEKKE EIPNGKNTKD LTIGEGLETQ LVEKKTRKRR IVSSGGKTSR KKSKDQSVVA ATTQKVQGEV ASQSCAVSPR EKLDVVVTGA 0201: DIESGEMNNI SMGENRQTSV ADRLLEEKNL TVNSELVDGQ TSGVVKEVLD NQTVKGALEK LDDLTGAIEQ DLETGEITAD IVMIDQEKGS TPVSELVDGQ 0301: ITSQDDERGE GRRLAPSALD NLQTAEVVTN ADNQLEASSG MTTGPATEKK RKRTKGSKDH IKQSTAAATT NSRKIVNEIN ELPGNGDCGD ATSKSLPIPE 0401: RETLQNPLVE AIQKETELGV KTVEDVGTNN METDTLVSHP ENHLVANSEL TSTPVTEKKK RQKKSSKDQI NLSATAATAT TASREIVNEI NGAPGNVDRV 0501: DATSESCLIS QRENLGKENE IGEKIKEDVG SGKAIPSSAD NIQTDKRVSY PDNQLEVSSG LTTGPTTEKK KRQKKSSKND INKSTAATTT SKIIVNEREK 0601: VSGSIDCVDA TSESIPNSKG EKLSDTVVDA RQNGNEMGDI LVDKVGSGEA TLIGADKIQA ASDLHVAGMA STPHAFVQES KTLDHIGKVT DSEHEVPKER 0701: VAIDADQAKS VKSTKKKSSR KAKTPAKEDT LVDSGAQNVE PIKVVDGEGH DNVIRNVLDS LQQRNEAEEN MEKSGKKSSK RSKKKDSLNI VEEAQVVDSL 0801: QQKKEAEENL EKSGKKSSKR SKKKDSLNIV EEAQVLSVEV NNVAQEEASP INNPKDTDAL FTPAKKNTES NASPLKKIIE VTDNTEDINR SMQVQKENAG 0901: MGDNIGSSQK DDIVGGANKQ DQVTGGTKSK KEKKSLDLHP GGSIDGSMKM KETKGRVQPS SSGTSQLQSM AKNDRSGSKV DLSDAPMKGT VNNKKEAVKK 1001: SSKSVTVNKS KMNVNNKEKA VKKISNSVTA NKSTTNFFKD AEEDESKTTT SDSTKAPSDS SSDNDSDVTS SMHMKQGNNL SGGTNRLSGS LQDIVRSSKS 1101: YKAAKLTASQ SQSDAFDDES LAKDVVPDSQ AVI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)