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AT3G63450.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.983
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G51950.2); Has 366 Blast hits to 230 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JNN5eggNOG:ENOG411185UEMBL:BT012552EMBL:CP002686
EnsemblPlants:AT3G63450EnsemblPlants:AT3G63450.1EnsemblPlants:AT3G63450.2entrez:825520
ExpressionAtlas:Q6NKZ1Gene3D:3.30.70.330GeneID:825520GO:GO:0000166
GO:GO:0003676Gramene:AT3G63450.1Gramene:AT3G63450.2hmmpanther:PTHR24009
hmmpanther:PTHR24009:SF3HOGENOM:HOG000242520InterPro:IPR000504InterPro:IPR012677
KEGG:ath:AT3G63450Pfam:PF00076Pfscan:PS50102PhylomeDB:Q6NKZ1
PROSITE:PS50102Proteomes:UP000006548RefSeq:NP_001030921.1RefSeq:NP_191904.2
SMART:SM00360SMR:Q6NKZ1SUPFAM:SSF54928TAIR:AT3G63450
UniGene:At.33921UniProt:Q6NKZ1
Coordinates (TAIR10) chr3:-:23427191..23428864
Molecular Weight (calculated) 45677.80 Da
IEP (calculated) 7.56
GRAVY (calculated) -0.44
Length 404 amino acids
Sequence (TAIR10)
(BLAST)
001: MDVYEATRIV LSRIQNLDPA NASKIIGLLL LQDHGEKEMI RLAFGPQNLL HSVIAKAKKD LEERLSFLTP RTAEDFESDL GFGWGHRKEV LRSNSVPPRL
101: ANQFTGYPFS PKGVNLQQSE AQRAAALMMG DDLHKLGIWR PERIDLSATA CPASRQIYLT FPADSIFREE DVSDYFSTFG PVQDVRIPYQ QKRMFGFVTF
201: MYPETVKSIL AKGNPHFVCH SRVLVKPYKE KGKVPDKTKP SRDIMDFQLG GRAFHEDLLW KRRFEERALE LQSTRLMNLQ LLDVEKQFQL NFDQTLLVSP
301: RLVSNNQRVC TKENDEDTIK LPESLEDDRL VDSPIVSPKH HFLECGVAAE TKGSGLSSPS FDQDESSTGT LKEPLKSLKC QMPRLSMMGI TQGSSGPTTC
401: RVGI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)