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AT3G62730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47980.1); Has 172 Blast hits to 172 proteins in 41 species: Archae - 0; Bacteria - 73; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK01eggNOG:ENOG4111989EMBL:AF410333EMBL:AL162651
EMBL:AY093727EMBL:CP002686EnsemblPlants:AT3G62730EnsemblPlants:AT3G62730.1
entrez:825448GeneID:825448Gramene:AT3G62730.1hmmpanther:PTHR31694
hmmpanther:PTHR31694:SF6HOGENOM:HOG000240047KEGG:ath:AT3G62730OMA:SAHNFAR
Pfam:PF13668PhylomeDB:Q9LZJ2PIR:T48062Proteomes:UP000006548
RefSeq:NP_191832.1TAIR:AT3G62730UniGene:At.4830UniProt:Q9LZJ2
Coordinates (TAIR10) chr3:-:23208003..23209436
Molecular Weight (calculated) 34733.60 Da
IEP (calculated) 5.05
GRAVY (calculated) -0.07
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MFKLCLVLVL VIAVDANPAK SGSCSCSGNI SASDVDRVHF AMNLEFTEAE FFLKGATGKG LDAYNATLAK GGPPPIGAKK ANLDPITNRI IEEFGYQEIG
101: HLRAITDMTG GIPRPLINLT RENFAVFMDR AVGRKSNPRF DPYANSLNYL LASYYIPYVG LTGYVGTIPY LVYFNIKKLV AGLLGVESGQ DAVIRTLLYE
201: RQNEKVEEYG GVTVAELTNE ISNLRNELGM CGIKDEGLCV PLWLGAENRT TSNILSADPY SLSYDRTAQE ILRVMYGTGD EHRPGGFWPC GANGRIARMF
301: LDEGCYGEYC VVCSHDN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)