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AT3G61520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 51879 Blast hits to 14395 proteins in 309 species: Archae - 5; Bacteria - 71; Metazoa - 859; Fungi - 887; Plants - 48189; Viruses - 0; Other Eukaryotes - 1868 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL132962EMBL:CP002686
EnsemblPlants:AT3G61520EnsemblPlants:AT3G61520.1entrez:825325Gene3D:1.25.40.10
GeneID:825325Genevisible:Q9M316GO:GO:0005739Gramene:AT3G61520.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF771HOGENOM:HOG000006152InParanoid:Q9M316
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT3G61520OMA:VESCTIR
PaxDb:Q9M316Pfam:PF01535Pfam:PF12854Pfam:PF13041
Pfam:Q9M316Pfscan:PS51375PhylomeDB:Q9M316PIR:T47944
PRIDE:Q9M316PRO:PR:Q9M316PROSITE:PS51375ProteinModelPortal:Q9M316
Proteomes:UP000006548RefSeq:NP_191711.1SMR:Q9M316STRING:3702.AT3G61520.1
SUPFAM:SSF81901TAIR:AT3G61520TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.47982UniGene:At.48108UniGene:At.946UniProt:Q9M316
Coordinates (TAIR10) chr3:-:22768974..22771274
Molecular Weight (calculated) 86910.90 Da
IEP (calculated) 7.21
GRAVY (calculated) -0.15
Length 766 amino acids
Sequence (TAIR10)
(BLAST)
001: MSIMLSISRR RNSYILLNHS RFLRRFSYDV DPRPEIKLES QEFVVVKFVK TLQKTPQHDW ASSESLSALV VSSSSASPLV FSQITRRLGS YSLAISFFEY
101: LDAKSQSLKR REESLSLALQ SVIEFAGSEP DPRDKLLRLY EIAKEKNIPL TVVATNLLIR WFGRMGMVNQ SVLVYERLDS NMKNSQVRNV VVDVLLRNGL
201: VDDAFKVLDE MLQKESVFPP NRITADIVLH EVWKGRLLTE EKIIALISRF SSHGVSPNSV WLTRFISSLC KNARANAAWD ILSDLMKNKT PLEAPPFNAL
301: LSCLGRNMDI SRMNDLVLKM DEVKIRPDVV TLGILINTLC KSRRVDEALE VFEKMRGKRT DDGNVIKADS IHFNTLIDGL CKVGRLKEAE ELLVRMKLEE
401: RCAPNAVTYN CLIDGYCRAG KLETAKEVVS RMKEDEIKPN VVTVNTIVGG MCRHHGLNMA VVFFMDMEKE GVKGNVVTYM TLIHACCSVS NVEKAMYWYE
501: KMLEAGCSPD AKIYYALISG LCQVRRDHDA IRVVEKLKEG GFSLDLLAYN MLIGLFCDKN NTEKVYEMLT DMEKEGKKPD SITYNTLISF FGKHKDFESV
601: ERMMEQMRED GLDPTVTTYG AVIDAYCSVG ELDEALKLFK DMGLHSKVNP NTVIYNILIN AFSKLGNFGQ ALSLKEEMKM KMVRPNVETY NALFKCLNEK
701: TQGETLLKLM DEMVEQSCEP NQITMEILME RLSGSDELVK LRKFMQGYSV ASPTEKASPF DVFSLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)