AT3G59580.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Plant regulator RWP-RK family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT2G43500.2); Has 701 Blast hits to 585 proteins in 46 species: Archae - 0; Bacteria - 15; Metazoa - 3; Fungi - 0; Plants - 625; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:22009652..22012721 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 98718.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.29 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 894 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MENPSASRDN KGFCFPDIPV EEMDGWVKNL ISEEDMFSSS STSELMNFES FASWCNSPSA ADILFTQYGL STSQSIIPFG GLEGSYACEK RPLDCTSVPR 101: SLSHSLDEKM LKALSLFMEF SGEGILAQFW TPIKTGDQYM LSTCDQAYLL DSRLSGYREA SRRFTFSAEA NQCSYPGLPG RVFISGVPEW TSNVMYYKTA 201: EYLRMKHALD NEVRGSIAIP VLEASGSSCC AVLELVTCRE KPNFDVEMNS VCRALQAVNL QTSTIPRRQY LSSNQKEALA EIRDVLRAVC YAHRLPLALA 301: WIPCSYSKGA NDELVKVYGK NSKECSLLCI EETSCYVNDM EMEGFVNACL EHYLREGQGI VGKALISNKP SFSSDVKTFD ICEYPLVQHA RKFGLNAAVA 401: TKLRSTFTGD NDYILEFFLP VSMKGSSEQQ LLLDSLSGTM QRLCRTLKTV SDAESIDGTE FGSRSVEMTN LPQATVSVGS FHTTFLDTDV NSTRSTFSNI 501: SSNKRNEMAG SQGTLQQEIS GARRLEKKKS STEKNVSLNV LQQYFSGSLK DAAKSLGVCP TTLKRICRQH GIMRWPSRKI NKVNRSLRKI QTVLDSVQGV 601: EGGLKFDSVT GEFVAVGPFI QEFGTQKSLS SHDEDALARS QGDMDEDVSV EPLEVKSHDG GGVKLEEDVE TNHQAGPGSL KKPWTWISKQ SGLIYSDDTD 701: IGKRSEEVNK DKEDLCVRRC LSSVALAGDG MNTRIERGNG TVEPNHSISS SMSDSSNSSG AVLLGSSSAS LEQNWNQIRT HNNSGESGSS STLTVKATYR 801: EDTVRFKLDP YVVGCSQLYR EVAKRFKLQE GAFQLKYLDD EEEWVMLVTD SDLHECFEIL NGMRKHTVKF LVRDIPNTAM GSSAGSNGYL GTGT |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)