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AT3G57680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peptidase S41 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: chloroplast thylakoid lumen, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT4G17740.2); Has 8999 Blast hits to 8993 proteins in 1973 species: Archae - 1; Bacteria - 5400; Metazoa - 54; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 3392 (source: NCBI BLink).
Protein Annotations
EC:3.4.21.102eggNOG:COG0793eggNOG:ENOG410IEW8EMBL:AL049660
EMBL:CP002686EnsemblPlants:AT3G57680EnsemblPlants:AT3G57680.1entrez:824937
Gene3D:2.30.42.10Gene3D:3.90.226.10GeneID:824937Genevisible:F4J3G5
GO:GO:0008236GO:GO:0009543Gramene:AT3G57680.1hmmpanther:PTHR32060
hmmpanther:PTHR32060:SF5InParanoid:F4J3G5InterPro:IPR001478InterPro:IPR004447
InterPro:IPR005151InterPro:IPR029045KEGG:ath:AT3G57680MEROPS:S41.A01
OMA:PDVQCTTPaxDb:F4J3G5Pfam:F4J3G5Pfam:PF00595
Pfam:PF03572Pfscan:PS50106PIR:T06752PRO:PR:F4J3G5
PROSITE:PS50106ProteinModelPortal:F4J3G5Proteomes:UP000006548RefSeq:NP_191327.4
SMART:SM00228SMART:SM00245SMR:F4J3G5STRING:3702.AT3G57680.1
SUPFAM:SSF50156SUPFAM:SSF52096TAIR:AT3G57680TIGRfam:TIGR00225
TIGRFAMs:TIGR00225UniGene:At.43387UniProt:F4J3G5
Coordinates (TAIR10) chr3:+:21381054..21383629
Molecular Weight (calculated) 56208.10 Da
IEP (calculated) 5.75
GRAVY (calculated) -0.10
Length 519 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKVVTLNHD LPLLHFPNSR KPFSIPSPIL RISSFKRHKK RSCLASSSRL GFYTETKTVS ESHGVIVDNS TIGRRLLGLA AAVSVAVSLS IFCDSPALAE
101: SLTIAFPVSR AREVTTVQRT LVEAWGLIRE TFVDPTFNHQ DWDFKLQQTM VEMFPLRSAD AAYGKLKAML STLGDPFTRL ITPKEYQSFR IGSDGNLQGV
201: GLFINSEPRT GHLVVMSCVE GSPADRAGIH EGEELVEING EKLDDVDSEA AAQKLRGRVG TFVTIKLKNV NGSGTDSGIR EVKLPRDYIK LSPISSAIIP
301: HTTPDGRLAK TGYVKLTAFS QTAASDMENA VHEMENQDVQ SYILDLRNNP GGLVRAGLDV AQLWLDGDET LVYTIDREGV TSPINMINGH AVTHDPLVVL
401: VNEGSASASE ILAGALHDNG RAILVGNRTF GKGKIQSITE LNDGSALFVT VAKYLSPSLH EIDQVGIAPD VQCTTGMIDS LTAEIVEKMN SSVPLLEADS
501: CVMVAEHELE ARRSNGTAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)