AT3G57680.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Peptidase S41 family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: chloroplast thylakoid lumen, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT4G17740.2); Has 8999 Blast hits to 8993 proteins in 1973 species: Archae - 1; Bacteria - 5400; Metazoa - 54; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 3392 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:21381054..21383629 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 56208.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.75 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 519 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEKVVTLNHD LPLLHFPNSR KPFSIPSPIL RISSFKRHKK RSCLASSSRL GFYTETKTVS ESHGVIVDNS TIGRRLLGLA AAVSVAVSLS IFCDSPALAE 101: SLTIAFPVSR AREVTTVQRT LVEAWGLIRE TFVDPTFNHQ DWDFKLQQTM VEMFPLRSAD AAYGKLKAML STLGDPFTRL ITPKEYQSFR IGSDGNLQGV 201: GLFINSEPRT GHLVVMSCVE GSPADRAGIH EGEELVEING EKLDDVDSEA AAQKLRGRVG TFVTIKLKNV NGSGTDSGIR EVKLPRDYIK LSPISSAIIP 301: HTTPDGRLAK TGYVKLTAFS QTAASDMENA VHEMENQDVQ SYILDLRNNP GGLVRAGLDV AQLWLDGDET LVYTIDREGV TSPINMINGH AVTHDPLVVL 401: VNEGSASASE ILAGALHDNG RAILVGNRTF GKGKIQSITE LNDGSALFVT VAKYLSPSLH EIDQVGIAPD VQCTTGMIDS LTAEIVEKMN SSVPLLEADS 501: CVMVAEHELE ARRSNGTAS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)