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AT3G59520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.746
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RHOMBOID-like protein 13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RHOMBOID-like protein 13 (RBL13); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 15 (TAIR:AT3G58460.2); Has 1791 Blast hits to 1791 proteins in 774 species: Archae - 24; Bacteria - 1315; Metazoa - 107; Fungi - 76; Plants - 130; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).
Protein Annotations
EC:3.4.21.-eggNOG:ENOG41100KJeggNOG:KOG2632EMBL:AL138659
EMBL:CP002686EnsemblPlants:AT3G59520EnsemblPlants:AT3G59520.1entrez:825121
Gene3D:1.20.1540.10GeneID:825121GO:GO:0004252GO:GO:0016021
Gramene:AT3G59520.1hmmpanther:PTHR12917hmmpanther:PTHR12917:SF21HOGENOM:HOG000238562
InParanoid:Q9M1B5InterPro:IPR022764KEGG:ath:AT3G59520OMA:KRTGSME
PaxDb:Q9M1B5Pfam:PF01694PhylomeDB:Q9M1B5PIR:T49293
PRIDE:Q9M1B5PRO:PR:Q9M1B5ProteinModelPortal:Q9M1B5Proteomes:UP000006548
RefSeq:NP_191511.1STRING:3702.AT3G59520.1SUPFAM:SSF144091TAIR:AT3G59520
tair10-symbols:ATRBL13tair10-symbols:RBL13TMHMM:TMhelixUniGene:At.43215
UniGene:At.50291UniProt:Q9M1B5
Coordinates (TAIR10) chr3:+:21992054..21992863
Molecular Weight (calculated) 29642.70 Da
IEP (calculated) 8.72
GRAVY (calculated) 0.81
Length 269 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRPLFYDII EKPATSCIVT LCSVIWFVIQ KKSIGYSQVG LSYETAIEGH YWRMITSALS HISVLHLVFN MSALWSLGVV EQLGHVGLGT AYYLHYTLVL
101: VVFSGVLVIG IYHLLIARFK IDYFRRVTAV GYSCVVFGWM TILSVKQPSS KLNLFGLLSL PISFAPFESL IFTSIIVPQA SFLGHLSGIL VGYAISWGLI
201: GGMNNYWALT MLGWIVVVFV FSLKKSGAYD FSFLEIESLT DASLPSVRFI GNGRTLQASA VPLSGVEVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)