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AT3G18620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.884
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DHHC-type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein with DHHC zinc finger domain (TAIR:AT2G14255.1); Has 4961 Blast hits to 4959 proteins in 248 species: Archae - 0; Bacteria - 0; Metazoa - 2163; Fungi - 692; Plants - 838; Viruses - 0; Other Eukaryotes - 1268 (source: NCBI BLink).
Protein Annotations
BRENDA:2.3.1.225EC:2.3.1.225eggNOG:COG5273eggNOG:KOG1313
EMBL:AP001303EMBL:AY080783EMBL:AY114003EMBL:CP002686
EnsemblPlants:AT3G18620EnsemblPlants:AT3G18620.1entrez:821393GeneID:821393
GO:GO:0005774GO:GO:0008270GO:GO:0016021GO:GO:0019706
Gramene:AT3G18620.1hmmpanther:PTHR22883hmmpanther:PTHR22883:SF35HOGENOM:HOG000006029
InterPro:IPR001594KEGG:ath:AT3G18620OMA:YHIWPPLPaxDb:Q9LIH7
Pfam:PF01529Pfam:Q9LIH7Pfscan:PS50216PhylomeDB:Q9LIH7
PRO:PR:Q9LIH7PROSITE:PS50216ProteinModelPortal:Q9LIH7Proteomes:UP000006548
RefSeq:NP_188492.2TAIR:AT3G18620TMHMM:TMhelixUniGene:At.38521
UniGene:At.71250UniProt:Q9LIH7
Coordinates (TAIR10) chr3:+:6408849..6410716
Molecular Weight (calculated) 37865.30 Da
IEP (calculated) 8.48
GRAVY (calculated) 0.40
Length 345 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDSSQGSFV ATINEDYEAI CWGCGLNLVL PSYAPVFKCG WCGAITNQNP VRPETKSFGL RRFRDRCFVV ILAVFMLFVI CGGIWAAYPV LFSISLACGI
101: FHSVTTATLA ISTLSTFILV AFKCAGKPTN ILYGTHPGVG NGALNNYTFC NYCSKPKSPR THHCRTCGMC VLDMDHHCPF IGNCVGAGNH KYFIAFLISA
201: VISTSYAAVM CVYTLIHILP PIEKGAAYAS DVAHVAHGNS ISILRVVKNI CLTYIANAVF ISVRSLVLVY LFVASVSVAI GLSVLLWQQL SYIYEGKTYL
301: SHLSSQGTEE DGEKSCRNLL TFFGCPHSIE RHLPTIRNLR KRHKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)