AT2G15560.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Putative endonuclease or glycosyl hydrolase | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G62200.1); Has 355 Blast hits to 333 proteins in 56 species: Archae - 0; Bacteria - 12; Metazoa - 73; Fungi - 48; Plants - 215; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:6788319..6789788 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 54264.10 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.70 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||
Length | 489 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MIQNAMSSYY NPSAATTLVS IDSDEQRRIK YLADLNMIAT QRHSSTDGPM AILWDMENCP VPSDVRPEDV ASNIRMAIQL HPVISGPVVN FSAYGDFNGF 101: PRRVREGCQR TGVKLIDVPN GRKDASDKAI LIDMFLFVLD NKPPATIVLV SGDVDFAPAL HILGQRGYTV ILVIPSSVYV NSALSNAGKF VWDWHSIVHG 201: EGFVPRCKPR VVPYLMGCNI GDNSNMDGLN EDETILYRGN CYSSDPRESS SLMVSQFRNE YSSGVMSCWP SNSGESMACP PSGHLESTMW VAPGDLNGLK 301: GQLVKLLELS GGCIPLMRVP SEYQRKFSKP LFVSDYGVAK LVDLFKKMSD VIVVDGKGNK RFVYLRNSKP NIISPSSPVV LLRRERKGKE PNGVTTNGGV 401: SSDEMSDTGS VQSERNLEEF KFELQDILVS YCCQVQMDCF EAIYKLRYKR PLAYTNMGVN HLEQLFDKLR DVVAIHEDPA TGRKLISPV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)