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AT2G15560.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Putative endonuclease or glycosyl hydrolase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G62200.1); Has 355 Blast hits to 333 proteins in 56 species: Archae - 0; Bacteria - 12; Metazoa - 73; Fungi - 48; Plants - 215; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IDYUeggNOG:ENOG411091JEMBL:AK175319EMBL:AK176350
EMBL:AK229491EMBL:BT010561EMBL:CP002685EnsemblPlants:AT2G15560
EnsemblPlants:AT2G15560.1entrez:816049Gene3D:3.40.50.1010GeneID:816049
GO:GO:0004519GO:GO:0005777GO:GO:0006979GO:GO:0010468
Gramene:AT2G15560.1hmmpanther:PTHR14379HOGENOM:HOG000029326InterPro:IPR021139
InterPro:IPR024768InterPro:IPR025605InterPro:IPR029060KEGG:ath:AT2G15560
OMA:SNIRMAIPANTHER:PTHR14379Pfam:PF01936Pfam:PF12872
Pfscan:PS51644PhylomeDB:Q6NQ97PROSITE:PS51644Proteomes:UP000006548
RefSeq:NP_179158.2SMR:Q6NQ97TAIR:AT2G15560UniGene:At.40388
UniProt:Q6NQ97
Coordinates (TAIR10) chr2:-:6788319..6789788
Molecular Weight (calculated) 54264.10 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.21
Length 489 amino acids
Sequence (TAIR10)
(BLAST)
001: MIQNAMSSYY NPSAATTLVS IDSDEQRRIK YLADLNMIAT QRHSSTDGPM AILWDMENCP VPSDVRPEDV ASNIRMAIQL HPVISGPVVN FSAYGDFNGF
101: PRRVREGCQR TGVKLIDVPN GRKDASDKAI LIDMFLFVLD NKPPATIVLV SGDVDFAPAL HILGQRGYTV ILVIPSSVYV NSALSNAGKF VWDWHSIVHG
201: EGFVPRCKPR VVPYLMGCNI GDNSNMDGLN EDETILYRGN CYSSDPRESS SLMVSQFRNE YSSGVMSCWP SNSGESMACP PSGHLESTMW VAPGDLNGLK
301: GQLVKLLELS GGCIPLMRVP SEYQRKFSKP LFVSDYGVAK LVDLFKKMSD VIVVDGKGNK RFVYLRNSKP NIISPSSPVV LLRRERKGKE PNGVTTNGGV
401: SSDEMSDTGS VQSERNLEEF KFELQDILVS YCCQVQMDCF EAIYKLRYKR PLAYTNMGVN HLEQLFDKLR DVVAIHEDPA TGRKLISPV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)