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AT3G56580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger C1A (TAIR:AT2G40830.3); Has 10169 Blast hits to 10097 proteins in 280 species: Archae - 0; Bacteria - 6; Metazoa - 2759; Fungi - 920; Plants - 4864; Viruses - 13; Other Eukaryotes - 1607 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AY045983EMBL:AY096613
EMBL:CP002686EMBL:DQ059114EnsemblPlants:AT3G56580EnsemblPlants:AT3G56580.1
EnsemblPlants:AT3G56580.2EnsemblPlants:AT3G56580.3entrez:824825Gene3D:3.30.40.10
GeneID:824825GO:GO:0000209GO:GO:0004842GO:GO:0008270
GO:GO:0009414GO:GO:0016874GO:GO:0042787GO:GO:0043161
GO:GO:0061630GO:GO:1902006Gramene:AT3G56580.1Gramene:AT3G56580.2
Gramene:AT3G56580.3hmmpanther:PTHR22763hmmpanther:PTHR22763:SF44HOGENOM:HOG000237766
InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT3G56580KO:K11982
OMA:CKEKFALPfam:PF13639Pfam:PF14369Pfscan:PS50089
PhylomeDB:Q94AK4PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_001030874.1
RefSeq:NP_567039.1RefSeq:NP_974448.1SMART:SM00184SMR:Q94AK4
SUPFAM:SSF57850TAIR:AT3G56580UniGene:At.26186UniProt:Q94AK4
Coordinates (TAIR10) chr3:+:20962563..20963525
Molecular Weight (calculated) 35793.40 Da
IEP (calculated) 7.99
GRAVY (calculated) -0.80
Length 320 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSIRNTHWC HRCQRAVWLR ARDAVCSYCG GGFVEEIDIG PSRAHRDVER DPTFDLMEAF SAFMRSRLAE RSYDREISGR LGSAGSESFS NLAPLLIFGG
101: QAPFRLAGGD NSSVEAFVNG AAPGIGIARG TNAGDYFFGP GLEELIEQLS SGTHHRGPPP APKSSIDALP TIKITQKHLK SSDSHCPVCK DEFELKSEAK
201: QMPCHHIYHS DCIVPWLVQH NSCPVCRKEL PSRGSSSSTQ SSQNRSTNGR ENSRRRNIFS NLWPFRSSSS SSTQNRRDTN NTATAEEGHY HHHQQQQQQH
301: QHQHQQQQSH MGYSGWPFDY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)