AT3G53400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 47 (TAIR:AT5G03190.1); Has 285 Blast hits to 285 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 279; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19798526..19799926 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52266.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.70 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.01 | ||||||||||||||||||||||||||||||||
| Length | 466 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFEVLKLKL MPSSFRRRVI LRALVIVCAF SVVSVLRNLA GAYEGETINN TQPCKVDECA VNFAFLGPFL FSGNGLLFSN RFLKPVWNYL ESDKCKDNIY 101: LTTQVVRELT GMNLLSNDSK ALCIGRRSVS AVLAMNRQGI SDVSVAYMPP VFAFKHRKFT SELHYEDASF GFVFSMDLES VAVPASLVYE IERILKPGGT 201: GAMLVGTTSG SDSNELVRSV SPVSSLLKNS SVVHVASLGK QVLVVFKRDG EDSFRLDQTH HDFPADCSSV LNNRPYIGLL EPLLDEKRSD FERRIHYLPE 301: FIDLSSRKRL VYIDIGAVDH VKARSNWFFP SYPIDRKAFN SYFVHHNTSI LTSYVKSPGV TFIYHPGLAA TKTTIANTGD HEEPFVEDDS FDFLAWFKET 401: ASFADFVVLK MNTSDTELKF LSELIKTGAI CSVDELFLHC TGYSDCTGII KSLRNSGVFV HQWWED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)