AT3G51250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.885 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Senescence/dehydration-associated protein-related | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Senescence/dehydration-associated protein-related; CONTAINS InterPro DOMAIN/s: Senescence/spartin-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: Senescence/dehydration-associated protein-related (TAIR:AT2G17840.1); Has 288 Blast hits to 288 proteins in 88 species: Archae - 0; Bacteria - 8; Metazoa - 87; Fungi - 46; Plants - 136; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19028227..19030442 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49907.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.56 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||
| Length | 463 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNPSHGGDDK QRPAMYPQVD QSIPDNPFAS TNPYVASSPY LYPSLSSHNL GPNLFPDHGD ASNDQSPSAP PQATEEVLIR VPGAILNLID KSYSVELACG 101: DFTIVRIIQG QNIVAVLANV GNEIQWPLTK NEVAAKVDGS HYFFSIHPPK EKGQGSGSDS DDEQGQKSKS KSDDEILNYG LTIASKGQEN VLLVLDQVLR 201: DYSCFTEQRM SEKAKETGEE VLGNSVVADT SPEELKGERK DVVEGQCAAY WTTLAPNVED YTHSTAKMIA SGSGKLIRGI LWCGDVTVER LKKGNEVMKN 301: RLSRAEKEKD VSPETLRRIK RVKRVTQMTE KVATGVLSGV VKVSGFITGS MANSKAGKKL FGLLPGEIVL ASLDGFSKIC DAVEVAGKNV MSTSSTVTTE 401: LVNHRYGTKA AEATNEGLDA AGHAFGTAWV AFKIRKAFNP KNVIKPSSLA KSVSELKAKK GSK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)