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AT3G48330.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : protein-l-isoaspartate methyltransferase 1
Curator
Summary (TAIR10)
encodes protein-L-isoaspartate methyltransferase. Important for maintaining viability as the seed ages. Involved in germination.
Computational
Description (TAIR10)
protein-l-isoaspartate methyltransferase 1 (PIMT1); FUNCTIONS IN: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity; INVOLVED IN: protein modification process, response to salt stress, aging, response to abscisic acid stimulus, seed germination; LOCATED IN: cellular_component unknown; EXPRESSED IN: seedling, seed; EXPRESSED DURING: dry seed stage; CONTAINS InterPro DOMAIN/s: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (InterPro:IPR000682); BEST Arabidopsis thaliana protein match is: protein-l-isoaspartate methyltransferase 2 (TAIR:AT5G50240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G48330-MONOMERBioCyc:ARA:GQT-2620-MONOMEREC:2.1.1.77eggNOG:COG2518
eggNOG:KOG1661EMBL:AL049659EMBL:BT029372EMBL:CP002686
EMBL:U31288EnsemblPlants:AT3G48330EnsemblPlants:AT3G48330.1EnsemblPlants:AT3G48330.2
entrez:823991Gene3D:3.40.50.150GeneID:823991GO:GO:0004719
GO:GO:0005737GO:GO:0005829GO:GO:0006479GO:GO:0007568
GO:GO:0009651GO:GO:0009737GO:GO:0009845GO:GO:0030091
Gramene:AT3G48330.1Gramene:AT3G48330.2hmmpanther:PTHR11579hmmpanther:PTHR11579:SF8
HOGENOM:HOG000257189InParanoid:Q42539InterPro:IPR000682InterPro:IPR029063
iPTMnet:Q42539KEGG:ath:AT3G48330OMA:CFARYIHPANTHER:PTHR11579
PaxDb:Q42539Pfam:PF01135Pfam:Q42539PhylomeDB:Q42539
PIR:T06709PRIDE:Q42539PRO:PR:Q42539PROSITE:PS01279
ProteinModelPortal:Q42539Proteomes:UP000006548Reactome:R-ATH-5676934RefSeq:NP_680112.2
RefSeq:NP_851013.2scanprosite:PS01279SMR:Q42539STRING:3702.AT3G48330.1
SUPFAM:SSF53335TAIR:AT3G48330tair10-symbols:ATPIMT1tair10-symbols:PIMT1
TIGRfam:TIGR00080TIGRFAMs:TIGR00080UniGene:At.3161UniGene:At.70492
UniProt:Q42539
Coordinates (TAIR10) chr3:-:17892969..17893975
Molecular Weight (calculated) 24615.40 Da
IEP (calculated) 5.57
GRAVY (calculated) -0.05
Length 230 amino acids
Sequence (TAIR10)
(BLAST)
001: MKQFWSPSSI NKNKAMVENL QNHGIVTSDE VAKAMEAVDR GVFVTDRSSA YVDSPMSIGY NVTISAPHMH AMCLQLLEKH LKPGMRVLDV GSGTGYLTAC
101: FAVMVGTEGR AIGVEHIPEL VASSVKNIEA SAASPFLKEG SLAVHVGDGR QGWAEFAPYD AIHVGAAAPE IPEALIDQLK PGGRLVIPVG NIFQDLQVVD
201: KNSDGSVSIK DETSVRYVPL TSREAQLRGD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)