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AT5G22700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like/FBD-like domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (TAIR:AT5G22660.2); Has 2254 Blast hits to 2213 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 2253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AB006699EMBL:AB493754EMBL:CP002688EnsemblPlants:AT5G22700
EnsemblPlants:AT5G22700.1entrez:832333Gene3D:3.80.10.10GeneID:832333
Genevisible:Q9FNJ1Gramene:AT5G22700.1hmmpanther:PTHR32212hmmpanther:PTHR32212:SF126
HOGENOM:HOG000015216InParanoid:Q9FNJ1InterPro:IPR001810InterPro:IPR006566
InterPro:IPR013101InterPro:IPR032675iPTMnet:Q9FNJ1KEGG:ath:AT5G22700
OMA:SICEIEVPaxDb:Q9FNJ1Pfam:PF00646Pfam:PF07723
Pfam:PF08387Pfam:Q9FNJ1Pfscan:PS50181PhylomeDB:Q9FNJ1
PRO:PR:Q9FNJ1PROSITE:PS50181ProteinModelPortal:Q9FNJ1Proteomes:UP000006548
RefSeq:NP_197662.2SMART:SM00256SMART:SM00579SUPFAM:SSF52058
SUPFAM:SSF81383TAIR:AT5G22700UniGene:At.27754UniProt:Q9FNJ1
Coordinates (TAIR10) chr5:-:7545653..7547307
Molecular Weight (calculated) 50374.20 Da
IEP (calculated) 6.32
GRAVY (calculated) 0.10
Length 437 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNRGDRISS LPDELLCQIL SNLPTKNAVT TSILSTRWRS IWLSTPVLDI DIDAFDDATT FVSFASRFLE FSKDSCLHKF KLSVERDDVD MCTIMPWIQD
101: AVNRRIQHLE VDCRFSFHFE AVYLTLYLSE TLVSLRLHFV TLHRYEFVSL PNLKVMHLEE NIYYCLETLE NFISSCPVLE DLTVVRIVDI ITEKILRVRS
201: RSLNSLKLVL DSSNGWFIDD IDEWKVIIDA PRLAYLSLKD DQSASFVISN LGSSAKADIK VSFNVNDIWD LPVTFERSNV GKLLTGLSSI RDLTISGTTL
301: MIICHYLKHE PMPQFCNMVR LNARFYDCDL EMLPCVLESC PNLKSLVLGL LSSAETEQQS RVSSVPPCFL SSLEFVEIRS RLCRKRYVMK VARYFAKNSV
401: MLKKFVYVGR VSIQEEDLLA LLWRYSICEI EVRGLRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)