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AT3G47080.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.977
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G07280.3); Has 387 Blast hits to 270 proteins in 35 species: Archae - 8; Bacteria - 81; Metazoa - 0; Fungi - 0; Plants - 274; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JNFTeggNOG:ENOG411159ZEMBL:AL133292EMBL:AY039956
EMBL:AY079400EMBL:CP002686EnsemblPlants:AT3G47080EnsemblPlants:AT3G47080.1
entrez:823861Gene3D:1.25.40.10GeneID:823861Gramene:AT3G47080.1
hmmpanther:PTHR26312hmmpanther:PTHR26312:SF87HOGENOM:HOG000241467IntAct:Q9SD65
InterPro:IPR011990InterPro:IPR013026KEGG:ath:AT3G47080ncoils:Coil
OMA:HSSIERKPfscan:PS50293PhylomeDB:Q9SD65PIR:T45644
PROSITE:PS50293Proteomes:UP000006548RefSeq:NP_190292.1SMR:Q9SD65
SUPFAM:SSF48452TAIR:AT3G47080UniGene:At.22244UniProt:Q9SD65
Coordinates (TAIR10) chr3:-:17338415..17340129
Molecular Weight (calculated) 58193.60 Da
IEP (calculated) 6.58
GRAVY (calculated) -0.48
Length 515 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVKVATTTS FHWSGRHTAI PQCPSFSQTL TSSKRRRSRG IAGDVSVGGG SLRLKPSTFL GTQSGKLHRS KSCELWQFSN STTKKIRTDV KKKHNPLRRV
101: CSASSGFFSS DEAFSVKMQE LASQFRNAGD EEEEENKQKS EAVDNDNDSN NHRFGSLKLL QESVPGLASL EAPWAEMVNH SSIERKANSV DLPLSLRIIK
201: RKLQEEALKK ASATTYCSIN RAFSSMVFMI EELHSFALQT RVGVLKQVKK EMHASLLWIF QRVFSQTPTL MVYVMILLAN YTVHSVASNL PIAASPPVVN
301: KGPDQTQQRI DFSSLKESTK LDGSKWLGSI NFDKVSHLPR HRDSVSGEGM REEEVSLWNS MVEEADQMQD SSVDRDMRLR LVSPITARIE LDDYANYTRT
401: ELLYKIGLAQ EPDNHLLLAN YAQFLYLVTQ DHERAENCFK KAIESEDVDA ETYSKYAIFL WKVRNDLWAA EENFLEAISA DPTNSFYAAN YANFLWNTGG
501: EETCFPLEDS TQEMV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)