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AT3G45010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine carboxypeptidase-like 48
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
serine carboxypeptidase-like 48 (scpl48); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 47 (TAIR:AT5G22980.1); Has 3550 Blast hits to 3457 proteins in 337 species: Archae - 0; Bacteria - 135; Metazoa - 672; Fungi - 884; Plants - 1462; Viruses - 0; Other Eukaryotes - 397 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G45010-MONOMERChEMBL:CHEMBL1932908EC:3.4.16.-eggNOG:COG2939
eggNOG:KOG1282EMBL:AK222084EMBL:AL353992EMBL:AY050427
EMBL:AY057639EMBL:AY093993EMBL:CP002686EnsemblPlants:AT3G45010
EnsemblPlants:AT3G45010.1entrez:823636ESTHER:arath-F14D17.80Gene3D:3.40.50.1820
GeneID:823636Genevisible:Q56WF8GO:GO:0004185GO:GO:0005576
GO:GO:0005773GO:GO:0051603Gramene:AT3G45010.1hmmpanther:PTHR11802
hmmpanther:PTHR11802:SF79HOGENOM:HOG000198296InParanoid:Q56WF8InterPro:IPR001563
InterPro:IPR018202InterPro:IPR029058InterPro:IPR033124KEGG:ath:AT3G45010
KO:K16298MEROPS:S10.A46OMA:AGNVNYYPANTHER:PTHR11802
PaxDb:Q56WF8Pfam:PF00450Pfam:Q56WF8PhylomeDB:Q56WF8
PIR:T48977PRIDE:Q56WF8PRINTS:PR00724PRO:PR:Q56WF8
PROSITE:PS00131PROSITE:PS00560ProteinModelPortal:Q56WF8Proteomes:UP000006548
RefSeq:NP_190087.1scanprosite:PS00131scanprosite:PS00560SMR:Q56WF8
STRING:3702.AT3G45010.1SUPFAM:SSF53474TAIR:AT3G45010tair10-symbols:scpl48
UniGene:At.1756UniGene:At.49667UniProt:Q56WF8
Coordinates (TAIR10) chr3:+:16466328..16468845
Molecular Weight (calculated) 56898.80 Da
IEP (calculated) 5.19
GRAVY (calculated) -0.34
Length 510 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSKTTFLTF LLCIFIFSHF SPSTSKSLTE KPLSFSPSAS LPTLTAERLI KGFNLMPTRD VNVIDEEGSE APRLVERAFD LPAAVDRRGS GGSPSVQDFG
101: HHAGYYKLPN SKAARMFYFF FESRTNKADP VVIWLTGGPG CSSELALFYE NGPFTVSNNS SLSWNEFGWD KASNLIYVDQ PVGTGFSYTS DQSDLRHDED
201: GVSNDLYDFL QAFFKEHPQF VKNDFYITGE SYAGHYIPAL ASRVHRGNKN KEGTHINLKG FAIGNGLTNP EIQYGAYADY ALDMNLITQS DHDNLNRYYA
301: TCQQSIKECS ADGGEGDACA SSYTVCNNIF QKIMDIAGNV NYYDVRKQCE GSLCYDFSNM ENFLNQKSVR KALGVGDIEF VSCSTAVYEA MQMDWMRNLE
401: VGIPALLQDG IKLLVYAGEY DLICNWLGNS KWVHEMEWSG QKEFVAAATV PFHVDNKEAG LMKNYGSLTF LKVHDAGHMV PMDQPKAALQ MLQNWMQGKL
501: STPTGRTAHQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)