suba logo
AT3G43590.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : zinc knuckle (CCHC-type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: Zinc knuckle (CCHC-type) family protein (TAIR:AT3G43490.1); Has 22952 Blast hits to 17782 proteins in 462 species: Archae - 2; Bacteria - 65; Metazoa - 3265; Fungi - 1419; Plants - 1360; Viruses - 15440; Other Eukaryotes - 1401 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5082eggNOG:KOG4400EMBL:AL391734EMBL:AY099824
EMBL:BT002203EMBL:CP002686EnsemblPlants:AT3G43590EnsemblPlants:AT3G43590.1
entrez:823456Gene3D:4.10.60.10GeneID:823456GO:GO:0003676
GO:GO:0008270Gramene:AT3G43590.1hmmpanther:PTHR23002hmmpanther:PTHR23002:SF69
HOGENOM:HOG000071063IntAct:Q9FYD1InterPro:IPR001878KEGG:ath:AT3G43590
OMA:RECPNSSPfam:PF00098Pfscan:PS50158PhylomeDB:Q9FYD1
PROSITE:PS50158Proteomes:UP000006548RefSeq:NP_189945.1SMART:SM00343
SMR:Q9FYD1STRING:3702.AT3G43590.1SUPFAM:SSF57756TAIR:AT3G43590
UniGene:At.36254UniProt:Q9FYD1
Coordinates (TAIR10) chr3:+:15509753..15512255
Molecular Weight (calculated) 62571.90 Da
IEP (calculated) 7.65
GRAVY (calculated) -1.30
Length 551 amino acids
Sequence (TAIR10)
(BLAST)
001: MPRQNKDEKF VFDDGEDEDR EDPVAITEVD NGEEEDDDEA NEDLSLKILE KALSRRDVGN KLDSDLSSDS GVVSTVMVNG VKSKVKKSES SKKMKRNKLE
101: ADHEIPIVWN DQDEEKVVEE IVKGEGEDDE VERSDEPKTE ETASNLVLKK LLRGARYFDP PDAGWVSCYS CGEQGHTSFN CPTPTKRRKP CFICGSLEHG
201: AKQCSKGHDC YICKKTGHRA KDCPDKYKNG SKGAVCLRCG DFGHDMILCK YEYSKEDLKD VQCYICKSFG HLCCVEPGNS LSWAVSCYRC GQLGHSGLAC
301: GRHYEESNEN DSATPERLFN SREASECYRC GEEGHFAREC PNSSSISTSH GRESQTLCYR CNGSGHFARE CPNSSQVSKR DRETSTTSHK SRKKNKENSE
401: HDSTPHESNG KTKKKKKKKT HKEEQPQTSP RKRKHRGGWI TEEPEEESFQ RGKMRRPKSP ITPSGYNRSP STHIGHNYRS PKFNSGGHYP GSQSSRHHSG
501: PSPSRWQPSH QHHHHHQHLH HHHQNHSYEP APPRHGRANR YSEFAGNYER W
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)