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AT3G27270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.983
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: embryo, leaf whorl, sperm cell, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related (TAIR:AT5G14280.1); Has 78 Blast hits to 78 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSQFeggNOG:ENOG41108KIEMBL:AP000381EMBL:BT014791
EMBL:BT015695EMBL:CP002686EnsemblPlants:AT3G27270EnsemblPlants:AT3G27270.1
entrez:822346GeneID:822346GO:GO:0016021Gramene:AT3G27270.1
hmmpanther:PTHR31766hmmpanther:PTHR31766:SF2HOGENOM:HOG000241337InterPro:IPR006634
KEGG:ath:AT3G27270OMA:YASYSVCPfam:PF03798Pfscan:PS50922
PhylomeDB:Q9LK26PROSITE:PS50922Proteomes:UP000006548RefSeq:NP_189363.1
SMART:SM00724TAIR:AT3G27270TMHMM:TMhelixUniGene:At.43924
UniProt:Q9LK26
Coordinates (TAIR10) chr3:+:10073315..10074064
Molecular Weight (calculated) 27779.00 Da
IEP (calculated) 8.57
GRAVY (calculated) 0.71
Length 249 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPITYSKDL PLFFSIFIFV YLLGYLFIFK KWTPETRPLA SSCLISLLHG VSAVVLATNA LLSDPNRGFS SVNTQSQNSI LDFSSAYFLA DLVHLAVFPS
101: PAGGDSLFAA HHLAVLFVFL TCRYMVAHGA CALLALLVVA EATSACQNTW TLADARGKDA PLAVSLHRFV TVPFYASYSV CRCVLAPLLI VKMTWFYVSG
201: GADDVIPRWV WVSWTVVIVT AVTVSILWIW NLWVLFFQER YSKFTKKVR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)