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AT3G23570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Dienelactone hydrolase (InterPro:IPR002925); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G23600.1); Has 1694 Blast hits to 1693 proteins in 498 species: Archae - 20; Bacteria - 786; Metazoa - 71; Fungi - 502; Plants - 214; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).
Protein Annotations
DNASU:821936eggNOG:COG0412eggNOG:KOG3043EMBL:AF370531
EMBL:CP002686EnsemblPlants:AT3G23570EnsemblPlants:AT3G23570.1entrez:821936
ESTHER:arath-Q9LUH1Gene3D:3.40.50.1820GeneID:821936GO:GO:0005829
GO:GO:0016787Gramene:AT3G23570.1hmmpanther:PTHR17630hmmpanther:PTHR17630:SF48
InterPro:IPR002925InterPro:IPR029058KEGG:ath:AT3G23570ncoils:Coil
OMA:GHQCTENPfam:PF01738PhylomeDB:Q94JY3Proteomes:UP000006548
RefSeq:NP_566731.1STRING:3702.AT3G23570.1SUPFAM:SSF53474TAIR:AT3G23570
UniGene:At.8048UniProt:Q94JY3
Coordinates (TAIR10) chr3:-:8458052..8459608
Molecular Weight (calculated) 26531.70 Da
IEP (calculated) 5.17
GRAVY (calculated) -0.26
Length 239 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGHQCTENP PDLDPTSGSG HVEKLGNLDT YVCGSTHSKL AVLLVPHVFG YETPNLRKLA DKVAEAGFYA VVPDFFHGDP YNPENQDRPF PIWMKDHELE
101: KGFEESKPIV EALKNKGITS IGAAGFCWGA KVAVELAKEK LVDATVLLHP ARVTVDDIKE VNLPIAVLGA EIDQVSPPEL VRQFEDILAS KPQVKSFVKI
201: FPRCKHGWTV RYNENDPSEV EAAMEAHKDM LAWLIDYLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)