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AT4G30530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25587034 (2015): cytosol
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Class I glutamine amidotransferase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Class I glutamine amidotransferase-like superfamily protein; FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT2G23960.1); Has 6062 Blast hits to 6062 proteins in 1405 species: Archae - 320; Bacteria - 2958; Metazoa - 7; Fungi - 211; Plants - 100; Viruses - 3; Other Eukaryotes - 2463 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G30530-MONOMERBioCyc:MetaCyc:AT4G30530-MONOMEREC:3.4.19.-eggNOG:COG0518
eggNOG:KOG3179EMBL:AF410267EMBL:AL161577EMBL:AY087727
EMBL:AY093724EMBL:CP002687EnsemblPlants:AT4G30530EnsemblPlants:AT4G30530.1
entrez:829176Gene3D:3.40.50.880GeneID:829176GO:GO:0005829
GO:GO:0006749GO:GO:0008233GO:GO:0019760GO:GO:0034722
Gramene:AT4G30530.1gramene_pathway:2.1.1.-gramene_pathway:PWY-2821hmmpanther:PTHR11922
hmmpanther:PTHR11922:SF42InterPro:IPR017926InterPro:IPR029062KEGG:ath:AT4G30530
MEROPS:C26.A05OMA:LWETICKPaxDb:Q9M0A7Pfam:PF00117
Pfscan:PS51273PhylomeDB:Q9M0A7PIR:B85357PROSITE:PS51273
ProteinModelPortal:Q9M0A7Proteomes:UP000006548RefSeq:NP_194782.1SMR:Q9M0A7
STRING:3702.AT4G30530.1SUPFAM:SSF52317TAIR:AT4G30530UniGene:At.22320
UniGene:At.67555UniProt:Q9M0A7
Coordinates (TAIR10) chr4:+:14920605..14922286
Molecular Weight (calculated) 28387.00 Da
IEP (calculated) 5.43
GRAVY (calculated) -0.29
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MVEQKRYALF LATLDSEFVK KTYGGYHNVF VTTFGDEGEH WDSFRVVSGE FPDEKDLEKY DGFVISGSSH DAFENDDWIL KLCDIVKKID EMKKKILGIC
101: FGHQIIARVR GGTVGRAKKG PELKLGDITI VKDAITPGSY FGNEIPDSIA IIKCHQDEVL VLPETAKVLA YSKNYEVEMY SIEDHLFCIQ GHPEYNKEIL
201: FEIVDRVLAL GYVKQEFADA AKATMENRGA DRKLWETICK NFLKGRVPTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)