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AT3G22400.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.501
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PLAT/LH2 domain-containing lipoxygenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LOX5; FUNCTIONS IN: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding; INVOLVED IN: root development; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipoxygenase, iron binding site (InterPro:IPR020833), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: lipoxygenase 1 (TAIR:AT1G55020.1); Has 1471 Blast hits to 1435 proteins in 177 species: Archae - 0; Bacteria - 82; Metazoa - 527; Fungi - 46; Plants - 787; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Protein Annotations
BRENDA:1.13.11.58EC:1.13.11.58eggNOG:ENOG410IH0DeggNOG:ENOG410YN4N
EMBL:AB022215EMBL:AJ302043EMBL:CP002686EnsemblPlants:AT3G22400
EnsemblPlants:AT3G22400.1entrez:821808Gene3D:2.60.60.20Gene3D:4.10.372.10
GeneID:821808Genevisible:Q9LUW0GO:GO:0009507GO:GO:0010311
GO:GO:0031408GO:GO:0034440GO:GO:0046872GO:GO:0048364
GO:GO:1900366GO:GO:1990136Gramene:AT3G22400.1gramene_pathway:1.13.11.12
gramene_pathway:PWY-5410gramene_pathway:PWY-735hmmpanther:PTHR11771hmmpanther:PTHR11771:SF53
HOGENOM:HOG000230469InParanoid:Q9LUW0InterPro:IPR000907InterPro:IPR001024
InterPro:IPR001246InterPro:IPR013819InterPro:IPR020833InterPro:IPR020834
InterPro:IPR027433iPTMnet:Q9LUW0KEGG:ath:AT3G22400KO:K15718
OMA:TISRRPMPANTHER:PTHR11771PaxDb:Q9LUW0Pfam:PF00305
Pfam:PF01477Pfam:Q9LUW0Pfscan:PS50095Pfscan:PS51393
PhylomeDB:Q9LUW0PRIDE:Q9LUW0PRINTS:PR00087PRINTS:PR00468
PRO:PR:Q9LUW0PROSITE:PS00081PROSITE:PS00711PROSITE:PS50095
PROSITE:PS51393ProteinModelPortal:Q9LUW0Proteomes:UP000006548Reactome:R-ATH-2142691
Reactome:R-ATH-2142696Reactome:R-ATH-2142700Reactome:R-ATH-2142712Reactome:R-ATH-2142770
RefSeq:NP_188879.2scanprosite:PS00081scanprosite:PS00711SMART:SM00308
SMR:Q9LUW0STRING:3702.AT3G22400.1SUPFAM:SSF48484SUPFAM:SSF49723
TAIR:AT3G22400tair10-symbols:LOX5UniGene:At.37889UniPathway:UPA00382
UniProt:Q9LUW0
Coordinates (TAIR10) chr3:+:7927011..7931167
Molecular Weight (calculated) 101065.00 Da
IEP (calculated) 6.60
GRAVY (calculated) -0.47
Length 886 amino acids
Sequence (TAIR10)
(BLAST)
001: MIHTDIAEIL CVKPKTTKKT KTMEEDVKKT TTMKIEGEVV VMKKNLLDFK DVMASLLDRV NELLGRRVSL HLISSHQPDP ANEKRGRLGK AAHLEKWVTK
101: IKTSVTAEET AFGVTFDWDE SMGPPAAFVI KNHHHSQFYL KSLTLRGFPD GEGGATAIHF ICNSWIYPNH RYRSDRVFFS NKAYLPSETP ELIKELREEE
201: LKNLRGNEKG GEFKEWDRVY DYAYYNDLGA PDKGPDSVRP VLGGSPELPY PRRGKTGRKS TKSDPKSESR LALLNLNIYV PRDERFSHVK FSDFLAYALK
301: SVTQVLVPEI ASVCDKTINE FDSFEDVFHL YDGSIKLANG HTISKLRDVI PWEMFRELVR NDGERFLKYP LPDILKESRS AWRTDEEFAR EMLAGLNPVV
401: ISRLQEFPPK SCLDSAKYGN QHSSIRTEHI ESNMNGLNVQ EALEQNKLYI LDHHDALMPY LTRINSTNTK TYATRTLLLL QADGTLKPLA IELSLPHAQG
501: ESYGSVSKVF TPAEKGVEGS VWQLAKAYAA VNDSGYHQLI SHWLQTHAVI EPFIIASNRQ LSVVHPIHKL LHPHFRDTMN INALARHVLI NSDGVLERTV
601: FPSRYAMEMS SSIYKNWVFT EQALPKDLLK RGVAVEDPNS DNGVKLLIED YPFAVDGLEI WSAIKTWVTE YCTFYYNNDK TVQTDTEIQS WWTELRTKGH
701: GDKRHESWWP SMQTRDDLIE TCTIIIWIAS ALHAAVNFGQ YPYAGFLPNR PTVSRRFMPE PGTDEYAELE EDADVAFLKT ITPQLQTLLG ISIIEILSMH
801: STDEIYLGQR DSPNWTADDE PLEAFKRFGK ELELIENNII RRNNDKRFKN RTGPVNIPYT LLYPNTTDYT REGGITGKGI PNSVSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)