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AT3G20600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Curator
Summary (TAIR10)
Required for non-race specific resistance to bacterial and fungal pathogens.Mediates systemic acquired resistance (SAR) response.
Computational
Description (TAIR10)
non race-specific disease resistance 1 (NDR1); CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT3G20590.1); Has 471 Blast hits to 471 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 471; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:6939DNASU:821607eggNOG:ENOG410J0PUeggNOG:ENOG41113EN
EMBL:AF021346EMBL:AP000410EMBL:BT002004EMBL:BT006267
EMBL:CP002686EMBL:EF470696EMBL:EF470697EMBL:EF470704
EMBL:EF470706EnsemblPlants:AT3G20600EnsemblPlants:AT3G20600.1entrez:821607
GeneID:821607Genevisible:O48915GO:GO:0005886GO:GO:0009506
GO:GO:0009626GO:GO:0009814GO:GO:0009816GO:GO:0009817
GO:GO:0010942GO:GO:0016020GO:GO:0042742GO:GO:0046658
Gramene:AT3G20600.1hmmpanther:PTHR31415hmmpanther:PTHR31415:SF22HOGENOM:HOG000090922
InParanoid:O48915IntAct:O48915KEGG:ath:AT3G20600OMA:NCCTCCL
PaxDb:O48915Pfam:O48915PhylomeDB:O48915PRIDE:O48915
PRO:PR:O48915Proteomes:UP000006548RefSeq:NP_188696.1STRING:3702.AT3G20600.1
TAIR:AT3G20600tair10-symbols:NDR1TMHMM:TMhelixUniGene:At.38209
UniProt:O48915
Coordinates (TAIR10) chr3:+:7194877..7195536
Molecular Weight (calculated) 24675.00 Da
IEP (calculated) 10.41
GRAVY (calculated) -0.27
Length 219 amino acids
Sequence (TAIR10)
(BLAST)
001: MNNQNEDTEG GRNCCTCCLS FIFTAGLTSL FLWLSLRADK PKCSIQNFFI PALGKDPNSR DNTTLNFMVR CDNPNKDKGI YYDDVHLNFS TINTTKINSS
101: ALVLVGNYTV PKFYQGHKKK AKKWGQVKPL NNQTVLRAVL PNGSAVFRLD LKTQVRFKIV FWKTKRYGVE VGADVEVNGD GVKAQKKGIK MKKSDSSFPL
201: RSSFPISVLM NLLVFFAIR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)