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AT3G19960.2
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.667
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myosin 1
Curator
Summary (TAIR10)
member of Myosin-like proteins
Computational
Description (TAIR10)
myosin 1 (ATM1); CONTAINS InterPro DOMAIN/s: Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G50360.1); Has 7421 Blast hits to 6650 proteins in 772 species: Archae - 0; Bacteria - 19; Metazoa - 4930; Fungi - 705; Plants - 652; Viruses - 1; Other Eukaryotes - 1114 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5022eggNOG:KOG0160EMBL:CP002686EnsemblPlants:AT3G19960
EnsemblPlants:AT3G19960.2entrez:821534ExpressionAtlas:F4JCF9GeneID:821534
GO:GO:0003774GO:GO:0005524GO:GO:0016459Gramene:AT3G19960.2
hmmpanther:PTHR13140hmmpanther:PTHR13140:SF384InParanoid:F4JCF9InterPro:IPR000048
InterPro:IPR001609InterPro:IPR027417KEGG:ath:AT3G19960ncoils:Coil
OMA:TSAHEYKPaxDb:F4JCF9Pfam:PF00063Pfam:PF00612
Pfscan:PS50096Pfscan:PS51456PRIDE:F4JCF9PRINTS:PR00193
PROSITE:PS50096PROSITE:PS51456ProteinModelPortal:F4JCF9Proteomes:UP000006548
RefSeq:NP_001154628.2SMART:SM00015SMART:SM00242SMR:F4JCF9
STRING:3702.AT3G19960.2SUPFAM:SSF52540SUPFAM:SSF57997TAIR:AT3G19960
tair10-symbols:ATM1UniGene:At.515UniProt:F4JCF9
Coordinates (TAIR10) chr3:+:6949787..6956736
Molecular Weight (calculated) 132462.00 Da
IEP (calculated) 8.23
GRAVY (calculated) -0.40
Length 1176 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSQKVTPFMQ SLKSLPADYR FDGSPVSDRL ENSSGASVRL TNSNVPRKGG LRNGVSRTDT AAGDSEDSPY SGHGVFVEEQ SLTDDVDSGA ATMPLPQSDE
0101: RRWSDTSAYA RKKILQSWIQ LPNGNWELGK ILSTSGEESV ISLPEGKVIK VISETLVPAN PDILDGVDDL MQLSYLNEPS VLYNLNYRYN QDMIYTKAGP
0201: VLVAVNPFKE VPLYGNRYIE AYRKKSNESP HVYAIADTAI REMIRDEVNQ SIIIRCICIH ESMTYSISSS SGESGAGKTE TAKIAMQYLA ALGGGSGIEY
0301: EILKTNPILE AFGNAKTLRN DNSSRFGKLI EIHFSESGKI SGAQIQTFLL EKSRVVQCAE GERSYHIFYQ LCAGASPALR EKLNLTSAHE YKYLGQSNCY
0401: SINGVDDAER FHTVKEALDI VHVSKEDQES VFAMLAAVLW LGNVSFTVID NENHVEPVAD ESFLFHSLGS WCWKQECLLH NMCLSTVAKL IGCNINELTL
0501: TLSKRNMRVR NDTIVQKLTL PQAIDARDAL AKSIYSCLFD WLVEQINKSL AVGKRRTGRS ISILDIYGFE SFDKNSFEQF CINYANERLQ QHFNRHLFKL
0601: EQEEYIQDGI DWTRVDFEDN QNCLSLFEKK PLGLLSLLDE ESTFPNGTDL TLANKLKQHL QSNSCFRGDK GKLFTVVHYA GEVTYETTGF LEKNRDLLHS
0701: DSIQLLSSCS CLLPQAFASS MLIQSEKPVV GPLYKAGGAD SQRLSVATKF KSQLFQLMQR LGNTTPHFIR CIKPNNIQSP GVYEQGLVLQ QLRCCGVLEV
0801: LCKGPYKRFF IIAILHQFNI LPEMYQVGYT KLFFRTGQIG VLEDTRNRTL HGILRVQSSF RGYQARCLLK ELKRGISILQ SFVRGEKIRK EFAELRRRHK
0901: AAATIQSQVK SKIARIQYKG IADASVVIQS AIRGWLVRRC SGDIGWLKSG GAKTNELGEV LVKASVLSEL QRRVLKAEAA LREKEEENDI LQQRLQQYEN
1001: RWSEYETKMK SMEEIWQKQM RSLQSSLSIA KKSLAVEDSA RNSDASVNAS DATDWDSSSN QFRSQTSNGV GSRLQPMSAG LSVIGRLAEE FEQRAQVFGD
1101: DAKFLVEVKS GQVEANLDPD RELRRLKQMF ETWKKDYGGR LRETKLILSK LGSEESSGSM EKVKRKWWGR RNSTRY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)