suba logo
AT3G19450.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GroES-like zinc-binding alcohol dehydrogenase family protein
Curator
Summary (TAIR10)
Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates.
Computational
Description (TAIR10)
ATCAD4; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: cinnamyl alcohol dehydrogenase 5 (TAIR:AT4G34230.1); Has 40533 Blast hits to 40509 proteins in 3018 species: Archae - 756; Bacteria - 27152; Metazoa - 1406; Fungi - 3053; Plants - 2651; Viruses - 3; Other Eukaryotes - 5512 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT3G19450-MONOMERBioGrid:6812BRENDA:1.1.1.195EC:1.1.1.195
eggNOG:COG1064eggNOG:KOG0023EMBL:AB025624EMBL:AF370261
EMBL:AM887553EMBL:AM887554EMBL:AM887555EMBL:AM887556
EMBL:AM887557EMBL:AM887558EMBL:AM887559EMBL:AM887560
EMBL:AM887561EMBL:AM887562EMBL:AM887563EMBL:AM887564
EMBL:AM887565EMBL:AM887566EMBL:AM887567EMBL:AM887568
EMBL:AM887569EMBL:AM887570EMBL:AM887571EMBL:AM887572
EMBL:AY042841EMBL:AY063076EMBL:AY088220EMBL:AY302081
EMBL:CP002686EMBL:Z31715EnsemblPlants:AT3G19450EnsemblPlants:AT3G19450.1
entrez:821479Gene3D:3.40.50.720Gene3D:3.90.180.10GeneID:821479
Genevisible:P48523GO:GO:0008270GO:GO:0009809GO:GO:0045551
GO:GO:0052747GO:GO:0080167Gramene:AT3G19450.1gramene_pathway:1.1.1.194
gramene_pathway:1.1.1.195gramene_pathway:PWY-361gramene_plant_reactome:1119316gramene_plant_reactome:6875429
gramene_plant_reactome:6876560gramene_plant_reactome:6876813hmmpanther:PTHR11695hmmpanther:PTHR11695:SF574
HOGENOM:HOG000294667InParanoid:P48523InterPro:IPR002085InterPro:IPR002328
InterPro:IPR011032InterPro:IPR013149InterPro:IPR013154InterPro:IPR016040
InterPro:IPR020843KEGG:ath:AT3G19450KO:K00083OMA:RECRPCK
PANTHER:PTHR11695PaxDb:P48523Pfam:P48523Pfam:PF00107
Pfam:PF08240PhylomeDB:P48523PIR:S45094PRIDE:P48523
PRO:PR:P48523PROSITE:PS00059ProteinModelPortal:P48523Proteomes:UP000006548
RefSeq:NP_188576.1SABIO-RK:P48523scanprosite:PS00059SMART:SM00829
SMR:P48523STRING:3702.AT3G19450.1SUPFAM:SSF50129SUPFAM:SSF51735
TAIR:AT3G19450tair10-symbols:ATCAD4tair10-symbols:CADtair10-symbols:CAD-C
tair10-symbols:CAD4UniGene:At.24340UniPathway:UPA00711UniProt:P48523
Coordinates (TAIR10) chr3:+:6744859..6747005
Molecular Weight (calculated) 39100.30 Da
IEP (calculated) 5.24
GRAVY (calculated) 0.13
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSVEAGEKK ALGWAARDPS GVLSPYSYTL RSTGADDVYI KVICCGICHT DIHQIKNDLG MSNYPMVPGH EVVGEVLEVG SDVSKFTVGD VVGVGVVVGC
101: CGSCKPCSSE LEQYCNKRIW SYNDVYTDGK PTQGGFADTM IVNQKFVVKI PEGMAVEQAA PLLCAGVTVY SPLSHFGLMA SGLKGGILGL GGVGHMGVKI
201: AKAMGHHVTV ISSSDKKKEE AIEHLGADDY VVSSDPAEMQ RLADSLDYII DTVPVFHPLD PYLACLKLDG KLILMGVINT PLQFVTPLVI LGRKVISGSF
301: IGSIKETEEV LAFCKEKGLT STIETVKIDE LNIAFERLRK NDVRYRFVVD VAGSNLVEEA ATTTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)