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AT3G18260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.835
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Reticulon family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Reticulon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT3G10260.2); Has 1034 Blast hits to 1032 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 545; Fungi - 2; Plants - 476; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPKHeggNOG:KOG1792EMBL:AP000414EMBL:AY087239
EMBL:BT024845EMBL:CP002686EnsemblPlants:AT3G18260EnsemblPlants:AT3G18260.1
entrez:821354GeneID:821354Genevisible:Q9LJQ5GO:GO:0005789
GO:GO:0016021Gramene:AT3G18260.1hmmpanther:PTHR10994hmmpanther:PTHR10994:SF85
HOGENOM:HOG000237479InParanoid:Q9LJQ5InterPro:IPR003388iPTMnet:Q9LJQ5
KEGG:ath:AT3G18260OMA:VAEYNFVPaxDb:Q9LJQ5Pfam:PF02453
Pfam:Q9LJQ5Pfscan:PS50845PhylomeDB:Q9LJQ5PRIDE:Q9LJQ5
PRO:PR:Q9LJQ5PROSITE:PS50845ProteinModelPortal:Q9LJQ5Proteomes:UP000006548
RefSeq:NP_566604.1STRING:3702.AT3G18260.1TAIR:AT3G18260TMHMM:TMhelix
UniGene:At.38585UniProt:Q9LJQ5
Coordinates (TAIR10) chr3:-:6260328..6261504
Molecular Weight (calculated) 25881.90 Da
IEP (calculated) 9.57
GRAVY (calculated) 0.23
Length 225 amino acids
Sequence (TAIR10)
(BLAST)
001: MPIFTGSSSD SEDERTIHKT TKLFTRQRSI HSIFGGGKVA DILLWREPKI AATLVIGVSI LWFLMEVVEY NFITLICHAS MTSMLFFFIW STASDFLNWE
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)