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AT1G68230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.965
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Reticulon family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Reticulon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT3G61560.1); Has 419 Blast hits to 419 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 419; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:CP002684EnsemblPlants:AT1G68230EnsemblPlants:AT1G68230.1entrez:843152
ExpressionAtlas:F4HX72GeneID:843152GO:GO:0005789GO:GO:0016021
Gramene:AT1G68230.1hmmpanther:PTHR10994hmmpanther:PTHR10994:SF85InterPro:IPR003388
Pfam:PF02453Pfscan:PS50845PRIDE:F4HX72PROSITE:PS50845
ProteinModelPortal:F4HX72Proteomes:UP000006548RefSeq:NP_176990.1TAIR:AT1G68230
TMHMM:TMhelixUniGene:At.52432UniProt:F4HX72
Coordinates (TAIR10) chr1:+:25572185..25572921
Molecular Weight (calculated) 17793.90 Da
IEP (calculated) 9.43
GRAVY (calculated) 0.47
Length 151 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVFGYEMDE HRASSSRRRR SLYHNLGGGR FADIMFWKNK KESGTILGVF TLIWFLFEVV EYPFITFLCQ ILLLFIFIFL ICKPPSINDL RISESNWRFL
101: FNKINWFIIK LYDISSGKDF RLLFLAVVSL WILSVVGNYF SSLTLLYIGE S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)