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AT3G18010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : WUSCHEL related homeobox 1
Curator
Summary (TAIR10)
Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. Its mRNA is expressed in the initiating vascular primordium of the cotyledons during heart and torpedo stages.
Computational
Description (TAIR10)
WUSCHEL related homeobox 1 (WOX1); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 2 (TAIR:AT5G59340.1); Has 587 Blast hits to 587 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 587; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:6658eggNOG:ENOG410IVNPeggNOG:ENOG4111DVKEMBL:AB019230
EMBL:AY251394EMBL:CP002686EnsemblPlants:AT3G18010EnsemblPlants:AT3G18010.1
entrez:821325Gene3D:1.10.10.60GeneID:821325GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0005829GO:GO:0006351
GO:GO:0048513Gramene:AT3G18010.1hmmpanther:PTHR24326hmmpanther:PTHR24326:SF224
HOGENOM:HOG000090885InParanoid:Q6X7K0InterPro:IPR001356InterPro:IPR009057
KEGG:ath:AT3G18010OMA:HEDCSNGPaxDb:Q6X7K0Pfam:PF00046
Pfam:Q6X7K0Pfscan:PS50071PhylomeDB:Q6X7K0PRIDE:Q6X7K0
PRO:PR:Q6X7K0PROSITE:PS50071ProteinModelPortal:Q6X7K0Proteomes:UP000006548
RefSeq:NP_188428.3SMART:SM00389SMR:Q6X7K0STRING:3702.AT3G18010.1
SUPFAM:SSF46689TAIR:AT3G18010tair10-symbols:WOX1UniGene:At.49388
UniProt:Q6X7K0
Coordinates (TAIR10) chr3:-:6161155..6163183
Molecular Weight (calculated) 40144.90 Da
IEP (calculated) 7.43
GRAVY (calculated) -0.96
Length 350 amino acids
Sequence (TAIR10)
(BLAST)
001: MWTMGYNEGG ADSFNGGRKL RPLIPRLTSC PTAAVNTNSD HRFNMAVVTM TAEQNKRELM MLNSEPQHPP VMVSSRWNPT PDQLRVLEEL YRQGTRTPSA
101: DHIQQITAQL RRYGKIEGKN VFYWFQNHKA RERQKRRRQM ETGHEETVLS TASLVSNHGF DKKDPPGYKV EQVKNWICSV GCDTQPEKPS RDYHLEEPAN
201: IRVEHNARCG GDERRSFLGI NTTWQMMQLP PSFYSSSHHH HQRNLILNSP TVSSNMSNSN NAVSASKDTV TVSPVFLRTR EATNTETCHR NGDDNKDQEQ
301: HEDCSNGELD HQEQTLELFP LRKEGFCSDG EKDKNISGIH CFYEFLPLKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)