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AT3G15720.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 14517339
SwissProt : extracellular 16381842
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 14517339
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:16287169 (2006): extracellular region
  • PMID:14517339 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, anchored to membrane, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G35670.1); Has 4585 Blast hits to 4565 proteins in 589 species: Archae - 6; Bacteria - 1460; Metazoa - 14; Fungi - 1454; Plants - 1510; Viruses - 2; Other Eukaryotes - 139 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G15720-MONOMERBioCyc:ARA:GQT-1927-MONOMERCAZy:GH28EC:3.2.1.15
eggNOG:COG5434eggNOG:ENOG410IK0FEMBL:AB017071EMBL:CP002686
EnsemblPlants:AT3G15720EnsemblPlants:AT3G15720.1entrez:820815ExpressionAtlas:Q9LW07
Gene3D:2.160.20.10GeneID:820815Genevisible:Q9LW07GO:GO:0004650
GO:GO:0005576GO:GO:0005975GO:GO:0009505GO:GO:0031225
GO:GO:0046658GO:GO:0071555gramene_pathway:3.2.1.15gramene_pathway:PWY-1081
hmmpanther:PTHR31736hmmpanther:PTHR31736:SF10HOGENOM:HOG000237792InParanoid:Q9LW07
InterPro:IPR000743InterPro:IPR006626InterPro:IPR011050InterPro:IPR012334
OMA:GVDFRCSPaxDb:Q9LW07Pfam:PF00295Pfam:Q9LW07
PhylomeDB:Q9LW07PRIDE:Q9LW07PRO:PR:Q9LW07PROSITE:PS00502
ProteinModelPortal:Q9LW07Proteomes:UP000006548RefSeq:NP_566524.1scanprosite:PS00502
SMART:SM00710SMR:Q9LW07STRING:3702.AT3G15720.1SUPFAM:SSF51126
TAIR:AT3G15720TMHMM:TMhelixUniGene:At.39003UniProt:Q9LW07
Coordinates (TAIR10) chr3:-:5325329..5327457
Molecular Weight (calculated) 49302.60 Da
IEP (calculated) 5.25
GRAVY (calculated) -0.07
Length 456 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKKTWFLNF SLFFLQIFTS SNALDVTQFG AVGDGVTDDS QAFLKAWEAV CSGTGDGQFV VPAGMTFMLQ PLKFQGSCKS TPVFVQMLGK LVAPSKGNWK
101: GDKDQWILFT DIEGLVIEGD GEINGQGSSW WEHKGSRPTA LKFRSCNNLR LSGLTHLDSP MAHIHISECN YVTISSLRIN APESSPNTDG IDVGASSNVV
201: IQDCIIATGD DCIAINSGTS NIHISGIDCG PGHGISIGSL GKDGETATVE NVCVQNCNFR GTMNGARIKT WQGGSGYARM ITFNGITLDN VENPIIIDQF
301: YNGGDSDNAK DRKSSAVEVS KVVFSNFIGT SKSEYGVDFR CSERVPCTEI FLRDMKIETA SSGSGQVAQG QCLNVRGAST IAVPGLECLE LSTDMFSSAQ
401: LLEQTCMSAQ SVQPRTTTQP MQDPIWVFQS RGKQLRVYNI AILVSFISLV TYILAR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)