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AT3G13030.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.986
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hAT transposon superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT3G13020.1); Has 625 Blast hits to 607 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 623; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIHHeggNOG:ENOG410YAQ5EMBL:AB026645EMBL:AK317494
EMBL:BT004065EMBL:BT005049EMBL:CP002686EnsemblPlants:AT3G13030
EnsemblPlants:AT3G13030.1EnsemblPlants:AT3G13030.2EnsemblPlants:AT3G13030.3entrez:820489
GeneID:820489GO:GO:0003676Gramene:AT3G13030.1Gramene:AT3G13030.2
Gramene:AT3G13030.3hmmpanther:PTHR32166hmmpanther:PTHR32166:SF20HOGENOM:HOG000152984
InterPro:IPR007021InterPro:IPR008906InterPro:IPR012337KEGG:ath:AT3G13030
OMA:DAWVDQKPfam:PF04937Pfam:PF05699PhylomeDB:Q9LDS0
Proteomes:UP000006548RefSeq:NP_001030685.1RefSeq:NP_001154612.1RefSeq:NP_187909.1
SUPFAM:SSF53098TAIR:AT3G13030UniGene:At.39503UniProt:Q9LDS0
Coordinates (TAIR10) chr3:-:4169675..4171417
Molecular Weight (calculated) 61458.90 Da
IEP (calculated) 5.02
GRAVY (calculated) -0.17
Length 544 amino acids
Sequence (TAIR10)
(BLAST)
001: MVMEERSCHT ANRVGDVQMG NGHKRGRSED SSSNNVSIGV ETDKQDMLSN KAQKKWVFGK CVNLSAVDAP CFKEMMTVDG GQMGLESSDC HDLNGWRLQD
101: ALEEVQDRVE KIKESWAITG CSILLDAWVD QKGRDLVTFV ADCPAGLVYL ISFDVSDFKD DVTALLSLVN GLVEEVGVRN VTQIIACSTS GWVGELGELF
201: AGHDREVFWS VSVSHCFELM LVKISKIRSF GDIFDKVNNI WLFINNNPSV LNIFRDQCHG IDITVSSSEF EFVTPYLILE SIFKAKKNLT AMFASSNWNN
301: EQCIAISNLV SDSSFWETVE SVLKCTSPLI HGLLLFSTAN NQHLGYVYDT MDSIKESIAR EFNHKPQFYK PLWDVIDDVW NKHLHNPLHA AGYFLNPTAF
401: YSTNFHLDIE VVTGLISSLI HMVEDCHVQF KISTQIDMYR LGKDCFNEAS QADQITGISP AEWWAHKASQ YPELQSLAIK ILSQTCEGAS KYKLKRSLAE
501: KLLLSEGMSN RERQHLDELV FVQYNLHLQS YKAKLSEEID VYKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)