AT3G11402.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G11385.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:3573516..3575642 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81697.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.97 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||
| Length | 708 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDMKEVPPPP PPSGFKRYKK KRSKKMDNKE VPPPPPPPPP PVLPHIRSRK KMDIKEVHLP LPRHYPPPPP PLPPPPPYGF RRHHNQSGNE LEKRIARLGF 101: PTLRPFQSKR YDNQTLPNPR CPLSNPTYPH TLNPKFSVNT TNGCFTCGEN TSPWIDHHNV HFFCKRCHVE FHFGCHTYPS ELTHPYHLQH PLIFTFHNYQ 201: TGVISDARID ESFCTTVLSG SDPKKSGSID KCSWCGKNIQ GNWFYRCSIC KFCLDLSCSQ TDPPLLVANP KSHHHSLVFY ARPLLTPCDA CGSVNVLDPS 301: YACFQCNYMV HQSCIDLPRV IKITRHQHRL FHTPYLHSTI PPCRICYKPV DIKYGQYSCK HEDFSYVVHS KCATHENVWD GKELEEEPEE PDNIEDIVPF 401: EKVSNDMIKH FSHEHHLLKL EKYDRVRDAE KQCQACILPI NSHDFFYNCM ECDFFLHEVC AGLLRKLDHA LHVHPLVLDP SPQRHYNQNG CLGCSRKSTG 501: FRYKCSIEKC VLLDNVQIDV RCILVPDFFT HTAHEHPLFI STSEKGKSKI CCEACKEICL VSYLQCSECK FAMCYQCATI PNEVYYKYDK HFLSLCYGEV 601: VFGTYWCEVC EKEVDPRDWF YACNKCCITV HLQCVFGSSG YVKPGFTLYH YFTKMEVLSN SKSTRPFCTE CGQRCPSSVY YKLGWLGTST FCSLNCLTSK 701: EKLMVLST |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)