AT3G06260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.973 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : galacturonosyltransferase-like 4 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with putative galacturonosyltransferase activity. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
galacturonosyltransferase-like 4 (GATL4); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase-like 3 (TAIR:AT1G13250.1); Has 2860 Blast hits to 2846 proteins in 632 species: Archae - 2; Bacteria - 1548; Metazoa - 358; Fungi - 53; Plants - 770; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1893804..1894859 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40338.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.91 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||
| Length | 351 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASRSLSYTQ LLGLLSFILL LVTTTTMAVR VGVILHKPSA PTLPVFREAP AFRNGDQCGT READQIHIAM TLDTNYLRGT MAAVLSLLQH STCPENLSFH 101: FLSLPHFEND LFTSIKSTFP YLNFKIYQFD PNLVRSKISK SIRQALDQPL NYARIYLADI IPSSVDRIIY LDSDLVVVDD IEKLWHVEME GKVVAAPEYC 201: HANFTHYFTR TFWSDPVLVK VLEGKRPCYF NTGVMVVDVN KWRKGMYTQK VEEWMTIQKQ KRIYHLGSLP PFLLIFAGDI KAVNHRWNQH GLGGDNFEGR 301: CRTLHPGPIS LLHWSGKGKP WLRLDSRKPC IVDHLWAPYD LYRSSRHSLE E |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)