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AT3G05350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31911558 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Metallopeptidase M24 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Metallopeptidase M24 family protein; FUNCTIONS IN: hydrolase activity, aminopeptidase activity; INVOLVED IN: proteolysis, cellular process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Creatinase (InterPro:IPR000587); BEST Arabidopsis thaliana protein match is: aminopeptidase P1 (TAIR:AT4G36760.1); Has 11788 Blast hits to 11217 proteins in 2602 species: Archae - 275; Bacteria - 7526; Metazoa - 334; Fungi - 310; Plants - 154; Viruses - 0; Other Eukaryotes - 3189 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G05350-MONOMEReggNOG:COG0006eggNOG:KOG2413EMBL:AY079018
EMBL:BT001080EMBL:CP002686EnsemblPlants:AT3G05350EnsemblPlants:AT3G05350.1
entrez:819699Gene3D:3.40.350.10Gene3D:3.90.230.10GeneID:819699
GO:GO:0009507GO:GO:0009570GO:GO:0016787GO:GO:0046872
Gramene:AT3G05350.1hmmpanther:PTHR10804hmmpanther:PTHR10804:SF90HOGENOM:HOG000255713
IntAct:Q8RY11InterPro:IPR000587InterPro:IPR000994InterPro:IPR028980
InterPro:IPR029149InterPro:IPR032416KEGG:ath:AT3G05350KO:K01262
MEROPS:M24.A04OMA:FIAECYMPfam:PF00557Pfam:PF01321
Pfam:PF16188Pfam:PF16189PhylomeDB:Q8RY11Proteomes:UP000006548
RefSeq:NP_187186.5SMR:Q8RY11STRING:3702.AT3G05350.1SUPFAM:SSF53092
SUPFAM:SSF55920TAIR:AT3G05350UniGene:At.70398UniProt:Q8RY11
Coordinates (TAIR10) chr3:-:1527103..1533843
Molecular Weight (calculated) 78713.20 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.24
Length 710 amino acids
Sequence (TAIR10)
(BLAST)
001: MIPLTLSSPS LNRLVLSTSR YSHSLFLSNF NSLSLIHRKL PYKPLFGARC HASSSSSSSS SFTAKSSKEI RKAQTKVVVD EKLSSIRRLF SEPGVGIDAY
101: IIPSQDAHQS EFIAECYARR AYISGFTGSA GTAVVTKDKA ALWTDGRYFL QAEKQLNSSW ILMRAGNPGV PTASEWIADV LAPGGRVGID PFLFSADAAE
201: ELKEVIAKKN HELVYLYNVN LVDEIWKDSR PKPPSRQIRI HDLKYAGLDV ASKLLSLRNQ IMDAGTSAIV ISMLDEIAWV LNLRGSDVPH SPVMYAYLIV
301: EVDQAQLFVD NSKVTVEVKD HLKNAGIELR PYDSILQGID SLAARGAQLL MDPSTLNVAI ISTYKSACER YSRNFESEAK VKTKFTDSSS GYTANPSGIY
401: MQSPISWAKA IKNDAELKGM KNSHLRDAAA LAHFWAWLEE EVHKNANLTE VDVADRLLEF RSMQDGFMDT SFDTISGSGA NGAIIHYKPE PESCSRVDPQ
501: KLFLLDSGAQ YVDGTTDITR TVHFSEPSAR EKECFTRVLQ GHIALDQAVF PEGTPGFVLD GFARSSLWKI GLDYRHGTGH GVGAALNVHE GPQSISFRYG
601: NMTPLQNGMI VSNEPGYYED HAFGIRIENL LHVRDAETPN RFGGATYLGF EKLTFFPIQT KMVDVSLLSD TEVDWLNSYH AEVWEKVSPL LEGSTTQQWL
701: WNNTRPLAKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)