suba logo
AT3G05320.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 0.555
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : O-fucosyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
CAZy:GT65eggNOG:ENOG410IEPUeggNOG:ENOG410Y971EMBL:AC009177
EMBL:CP002686EMBL:KJ138840EnsemblPlants:AT3G05320EnsemblPlants:AT3G05320.1
entrez:819696GeneID:819696GO:GO:0016021GO:GO:0016757
Gramene:AT3G05320.1hmmpanther:PTHR37220hmmpanther:PTHR37220:SF1HOGENOM:HOG000238816
InterPro:IPR019378KEGG:00514+2.4.1.221KEGG:ath:AT3G05320OMA:KWTVERD
Pfam:PF10250PhylomeDB:Q9MA87Proteomes:UP000006548RefSeq:NP_187183.3
STRING:3702.AT3G05320.1TAIR:AT3G05320TMHMM:TMhelixUniGene:At.40691
unipathway:UPA00378UniProt:Q9MA87
Coordinates (TAIR10) chr3:-:1513558..1514895
Molecular Weight (calculated) 50651.20 Da
IEP (calculated) 9.51
GRAVY (calculated) -0.23
Length 445 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSPLSSKNL RIFSKSVACK CLVLVGIALF YRALLLSYSP RNALSNSLLF RDRHMSDSSS TGGIRTDKFL EVPQIVWGLN NQKIAFARAC LTARMMNRTL
101: LMPSLSASLF YKEVDKLRPI PFDKVFQFER FNSLCSGFVR LSRFSDVKNR AQVFDLEKGS GRRWTVERDL EHLKQSARNE SIDEFEVIRL IGKNPFLWHD
201: HWPVEDYAKV FECMVVVDEI SREADKVVMK IREAGEAERA KLASKTEILG PVPFVAVHMR IEIDWMIHCK KLEQRKKISE ICSSKREILD RVGNISGLKT
301: PTVLYLAVAD TLLEEKEEDS SVLSGWRDGL IPFEKKKLGV KEEIYGKYSY LIQSAIDYEV CLRADVFVGN SFSTFSSLIV LERTQKARRL GFMSSCKDGG
401: NKWRSYAYNL AGESNGVPRR WMTNMTHSSL QAISYGSNSV SCSSG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)