suba logo
AT3G02600.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.942
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:15060130 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : lipid phosphate phosphatase 3
Curator
Summary (TAIR10)
Encodes phosphatidic acid phosphatase. Expressed during germination.
Computational
Description (TAIR10)
lipid phosphate phosphatase 3 (LPP3); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: phosphatidic acid phosphatase 1 (TAIR:AT2G01180.1); Has 2088 Blast hits to 2083 proteins in 396 species: Archae - 13; Bacteria - 367; Metazoa - 922; Fungi - 397; Plants - 200; Viruses - 3; Other Eukaryotes - 186 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1071-MONOMERBioCyc:ARA:GQT-1072-MONOMERBioCyc:ARA:GQT-1073-MONOMERBioCyc:ARA:GQT-1074-MONOMER
EC:3.1.3.-eggNOG:COG0671eggNOG:KOG3030EMBL:AC021640
EMBL:AY084915EMBL:CP002686EnsemblPlants:AT3G02600EnsemblPlants:AT3G02600.1
EnsemblPlants:AT3G02600.2entrez:821299ExpressionAtlas:Q8LFD1Gene3D:1.20.144.10
GeneID:821299Genevisible:Q8LFD1GO:GO:0005886GO:GO:0005887
GO:GO:0006644GO:GO:0007165GO:GO:0008195GO:GO:0031969
GO:GO:0046839gramene_pathway:3.1.3.4gramene_pathway:TRIGLSYN-PWYhmmpanther:PTHR10165
hmmpanther:PTHR10165:SF80HOGENOM:HOG000215098InParanoid:Q8LFD1InterPro:IPR000326
InterPro:IPR028681iPTMnet:Q8LFD1KEGG:00051+3.1.3.-KEGG:00332+3.1.3.-
KEGG:00565+3.1.3.-KEGG:00600+3.1.3.-KEGG:00730+3.1.3.-KEGG:00740+3.1.3.-
KEGG:00760+3.1.3.-KEGG:ath:AT3G02600OMA:SHTIQTHPANTHER:PTHR10165:SF80
PaxDb:Q8LFD1Pfam:PF01569Pfam:Q8LFD1PhylomeDB:Q8LFD1
PRIDE:Q8LFD1PRO:PR:Q8LFD1ProteinModelPortal:Q8LFD1Proteomes:UP000006548
Reactome:R-ATH-2029485RefSeq:NP_001078095.1RefSeq:NP_001078096.1RefSeq:NP_001078097.1
RefSeq:NP_001078098.1RefSeq:NP_566177.1SMART:SM00014STRING:3702.AT3G02600.1
SUPFAM:SSF48317SwissPalm:Q8LFD1TAIR:AT3G02600tair10-symbols:ATLPP3
tair10-symbols:LPP3TMHMM:TMhelixUniGene:At.41112UniProt:Q8LFD1
Coordinates (TAIR10) chr3:+:551534..554411
Molecular Weight (calculated) 40777.30 Da
IEP (calculated) 6.72
GRAVY (calculated) 0.08
Length 364 amino acids
Sequence (TAIR10)
(BLAST)
001: MARFSFPCFP NFGGFNQAVT NRGPEISETA DNWVSPSDIP LIEPNSKEHR MREAQLGGHT LRSHGMTVAR THMHDWIILV LLVILECVLL IIHPFYRFVG
101: KDMMTDLSYP LKSNTVPIWS VPVYAMLLPL VIFIFIYFRR RDVYDLHHAV LGLLYSVLVT AVLTDAIKNA VGRPRPDFFW RCFPDGKALY DSLGDVICHG
201: DKSVIREGHK SFPSGHTSWS FSGLGFLSLY LSGKIQAFDG KGHVAKLCIV ILPLLFAALV GISRVDDYWH HWQDVFAGGL LGLAISTICY LQFFPPPYHT
301: EGWGPYAYFQ VLEAARVQGA ANGAVQQPPP QVNNGEEEDG GFMGLHLVDN PTMRREEDVE TGRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)