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AT3G02470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.793
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : S-adenosylmethionine decarboxylase
Curator
Summary (TAIR10)
Encodes a S-adenosylmethionine decarboxylase involved in polyamine biosynthesis.
Computational
Description (TAIR10)
S-adenosylmethionine decarboxylase (SAMDC); CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: Adenosylmethionine decarboxylase family protein (TAIR:AT5G15950.2); Has 1026 Blast hits to 1010 proteins in 271 species: Archae - 0; Bacteria - 57; Metazoa - 220; Fungi - 150; Plants - 531; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2067-MONOMERBioCyc:ARA:GQT-2068-MONOMERBioGrid:6547BRENDA:4.1.1.50
EC:4.1.1.50eggNOG:ENOG410XRN0eggNOG:KOG0788EMBL:AC021640
EMBL:AF428468EMBL:AK316891EMBL:AY042824EMBL:AY081446
EMBL:CP002686EMBL:U63633EMBL:Y07765EnsemblPlants:AT3G02470
EnsemblPlants:AT3G02470.1EnsemblPlants:AT3G02470.3EnsemblPlants:AT3G02470.4entrez:821214
Gene3D:3.60.90.10GeneID:821214Genevisible:Q96286GO:GO:0004014
GO:GO:0005829GO:GO:0006557GO:GO:0006596GO:GO:0006597
GO:GO:0008295GO:GO:0016458GO:GO:0019079GO:GO:0048513
Gramene:AT3G02470.1Gramene:AT3G02470.3Gramene:AT3G02470.4gramene_plant_reactome:1119317
gramene_plant_reactome:1119446gramene_plant_reactome:6874834gramene_plant_reactome:6876857hmmpanther:PTHR11570
hmmpanther:PTHR11570:SF4HOGENOM:HOG000159915InParanoid:Q96286IntAct:Q96286
InterPro:IPR001985InterPro:IPR016067InterPro:IPR018166InterPro:IPR018167
KEGG:00270+4.1.1.50KEGG:00330+4.1.1.50KEGG:ath:AT3G02470KO:K01611
OMA:DVARCKIPANTHER:PTHR11570PaxDb:Q96286Pfam:PF01536
Pfam:Q96286PhylomeDB:Q96286PIRSF:PIRSF001355PRO:PR:Q96286
PROSITE:PS01336ProteinModelPortal:Q96286Proteomes:UP000006548Reactome:R-ATH-351202
RefSeq:NP_001078093.1RefSeq:NP_001154585.1RefSeq:NP_186896.1SABIO-RK:Q96286
scanprosite:PS01336SMR:Q96286STRING:3702.AT3G02470.1SUPFAM:SSF56276
TAIR:AT3G02470tair10-symbols:SAMDCTIGRfam:TIGR00535TIGRFAMs:TIGR00535
UniGene:At.25574UniGene:At.69373UniGene:At.72938UniPathway:UPA00331
UniProt:Q96286
Coordinates (TAIR10) chr3:+:510223..511323
Molecular Weight (calculated) 40405.40 Da
IEP (calculated) 4.42
GRAVY (calculated) -0.25
Length 366 amino acids
Sequence (TAIR10)
(BLAST)
001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)