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AT2G16500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : arginine decarboxylase 1
Curator
Summary (TAIR10)
encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Promoter region of ADC1 contains 742-bp AT-rich transposable element, called AtATE, that belongs to the MITE families of repetitive elements.
Computational
Description (TAIR10)
arginine decarboxylase 1 (ADC1); CONTAINS InterPro DOMAIN/s: Orn/DAP/Arg decarboxylase 2, C-terminal (InterPro:IPR022643), Orn/DAP/Arg decarboxylase 2, conserved site (InterPro:IPR022657), Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site (InterPro:IPR022653), Ornithine/DAP/Arg decarboxylase (InterPro:IPR000183), Arginine decarboxylase (InterPro:IPR002985), Orn/DAP/Arg decarboxylase 2, N-terminal (InterPro:IPR022644); BEST Arabidopsis thaliana protein match is: arginine decarboxylase 2 (TAIR:AT4G34710.2); Has 7460 Blast hits to 7389 proteins in 2069 species: Archae - 108; Bacteria - 5016; Metazoa - 91; Fungi - 35; Plants - 637; Viruses - 2; Other Eukaryotes - 1571 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G16500-MONOMERBRENDA:4.1.1.19EC:4.1.1.19eggNOG:COG1166
eggNOG:ENOG410IKSUEMBL:AC007195EMBL:BT008636EMBL:CP002685
EMBL:U52851EnsemblPlants:AT2G16500EnsemblPlants:AT2G16500.1entrez:816149
Gene3D:2.40.37.10Gene3D:3.20.20.10GeneID:816149Genevisible:Q9SI64
GO:GO:0006527GO:GO:0006979GO:GO:0008295GO:GO:0008792
GO:GO:0009409GO:GO:0009651GO:GO:0033388Gramene:AT2G16500.1
gramene_pathway:4.1.1.19gramene_pathway:PWY-40gramene_pathway:PWY-43gramene_pathway:PWY-6305
gramene_plant_reactome:1119447gramene_plant_reactome:6876021hmmpanther:PTHR11482hmmpanther:PTHR11482:SF36
HOGENOM:HOG000029191InParanoid:Q9SI64InterPro:IPR000183InterPro:IPR002985
InterPro:IPR009006InterPro:IPR022643InterPro:IPR022644InterPro:IPR022653
InterPro:IPR022657InterPro:IPR029066KEGG:00330+4.1.1.19KEGG:ath:AT2G16500
KO:K01583OMA:CEWVIKAPANTHER:PTHR11482:SF36PaxDb:Q9SI64
Pfam:PF00278Pfam:PF02784Pfam:Q9SI64PhylomeDB:Q9SI64
PIR:A84541PIR:S71239PIRSF:PIRSF001336PRIDE:Q9SI64
PRINTS:PR01179PRINTS:PR01180PRO:PR:Q9SI64PROSITE:PS00878
PROSITE:PS00879ProteinModelPortal:Q9SI64Proteomes:UP000006548RefSeq:NP_179243.1
scanprosite:PS00878scanprosite:PS00879SMR:Q9SI64STRING:3702.AT2G16500.1
SUPFAM:SSF51419TAIR:AT2G16500tair10-symbols:ADC1tair10-symbols:ARGDC
tair10-symbols:ARGDC1tair10-symbols:SPE1TIGRfam:TIGR01273TIGRFAMs:TIGR01273
UniGene:At.10173UniPathway:UPA00186UniProt:Q9SI64
Coordinates (TAIR10) chr2:-:7150796..7152904
Molecular Weight (calculated) 76179.80 Da
IEP (calculated) 5.37
GRAVY (calculated) -0.08
Length 702 amino acids
Sequence (TAIR10)
(BLAST)
001: MPALAFVDTP IDTFSSIFTP SSVSTAVVDG SCHWSPSLSS SLYRIDGWGA PYFAANSSGN ISVRPHGSNT LPHQDIDLMK VVKKVTDPSG LGLQLPLIVR
101: FPDVLKNRLE CLQSAFDYAI QSQGYDSHYQ GVYPVKCNQD RFIIEDIVEF GSGFRFGLEA GSKPEILLAM SCLCKGNPEA FLVCNGFKDS EYISLALFGR
201: KLELNTVIVL EQEEELDLVI DLSQKMNVRP VIGLRAKLRT KHSGHFGSTS GEKGKFGLTT VQILRVVRKL SQVGMLDCLQ LLHFHIGSQI PSTALLSDGV
301: AEAAQLYCEL VRLGAHMKVI DIGGGLGIDY DGSKSGESDL SVAYSLEEYA AAVVASVRFV CDQKSVKHPV ICSESGRAIV SHHSVLIFEA VSAGQQHETP
401: TDHQFMLEGY SEEVRGDYEN LYGAAMRGDR ESCLLYVDQL KQRCVEGFKE GSLGIEQLAG VDGLCEWVIK AIGASDPVLT YHVNLSVFTS IPDFWGIDQL
501: FPIVPIHKLD QRPAARGILS DLTCDSDGKI NKFIGGESSL PLHEMDNNGC SGGRYYLGMF LGGAYEEALG GVHNLFGGPS VVRVLQSDGP HGFAVTRAVM
601: GQSSADVLRA MQHEPELMFQ TLKHRAEEPR NNNNKACGDK GNDKLVVASC LAKSFNNMPY LSMETSTNAL TAAVNNLGVY YCDEAAAGGG GKGKDENWSY
701: FG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)