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AT2G47090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc ion binding;nucleic acid binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc ion binding;nucleic acid binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G62240.1); Has 6997 Blast hits to 1745 proteins in 389 species: Archae - 0; Bacteria - 1326; Metazoa - 1009; Fungi - 441; Plants - 119; Viruses - 26; Other Eukaryotes - 4076 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5236eggNOG:KOG2231EMBL:CP002685EnsemblPlants:AT2G47090
EnsemblPlants:AT2G47090.1entrez:819322ExpressionAtlas:F4IK69GeneID:819322
GO:GO:0008270Gramene:AT2G47090.1hmmpanther:PTHR22938hmmpanther:PTHR22938:SF0
InParanoid:F4IK69InterPro:IPR001841InterPro:IPR007087InterPro:IPR015880
OMA:NQHISSGPaxDb:F4IK69Pfscan:PS50089PRIDE:F4IK69
PROSITE:PS00028PROSITE:PS50089ProteinModelPortal:F4IK69Proteomes:UP000006548
RefSeq:NP_566094.2scanprosite:PS00028SMART:SM00355SMR:F4IK69
STRING:3702.AT2G47090.1TAIR:AT2G47090UniGene:At.26314UniProt:F4IK69
Coordinates (TAIR10) chr2:-:19341444..19344297
Molecular Weight (calculated) 85369.50 Da
IEP (calculated) 9.33
GRAVY (calculated) -0.83
Length 766 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDSCAVCAE NLEWVGYGSC GHREVCSTCV VRLRFILNDR RCCICKTECP VVFVTKALGD YTKTISDFST TFPSVPKEGR VGSFWYHEET NVYFDDLNHY
101: TRIKAMCRLS CNLCNDTNKT RPKKEPNHCV RFKSVEHLKD HLNHQHKLHM CSLCLVGRKV FICEQKLFTK GQLNQHISSG DSEVDGSESE RGGFTGHPMC
201: EFCKRPFYGD NELYTHMSRE HYTCHICQRL KPGQYEYYGN YDDLEVHFRS DHFLCEDETC LAKKFIVFQI EAELKRHNAI DHGGRMSRSQ QNASLQIQAS
301: FQYPNSRRGR RRSSLREPNL VLLESQASYA FNDDNNLPQH VGRSGNSRLG ESSFPPLSVQ ANQGQSRFGQ NSESLVSNTT TTRQRHRANQ GQSRFGQNSE
401: SLVSNTTTTR QRHQTNRSAT SGSSQAWPAL NRGPAEISIT SRVQSSGASA QSQSRHHDRV ESTRTLASAV PQDARTTVGG CSSGSSLSSA NATKRNNHHS
501: SSTPKMSETR SLAQPSHSDS PQISAVKNRR SSSTSANAGN IQVAQGVSDV QSDNKSLVEK IHASLGHDEE LFMAFKNTSG KYRHGSIDAR TYLEYVKGYG
601: LSHLVLDMAR LCPDPQRQKE LIDTHNACLK GGNKGKAVKV ESSSDSKGDR FVDTVRKLQF SDKSQDKDKD KDAYRSDKGK TKVTTLVNSS SAGVGLGDTG
701: KQPKKTSKFL RTRLGEKSMA AVLDLRNSNP EPEPEPKNDN SKRSQNSPGG LPLRGAWKRG SAKLFV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)