AT2G47020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Peptide chain release factor 1 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Peptide chain release factor 1; FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: mitochondrion, cytoplasm; CONTAINS InterPro DOMAIN/s: Peptide chain release factor 1 (InterPro:IPR004373), Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: Peptide chain release factor 1 (TAIR:AT3G62910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:19320090..19322279 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46831.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.36 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||
| Length | 413 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRVLIRPNFL SNLIRYCSRG THSHDRSLRS VLSSNMIRLY TTGMEPQLSP DLIKIMDQRL SAIEHRNAVL QKLINQPEYS PEEFSRANKE LRKLRDSMLL 101: INDLRAKQKE IDGLKSLVSE SSDDKDMLDL AVGELDEAVE EEKRLQTLLL KSLLPKDEAD ERDCILEVRA GTGGEEASLF AMDIFRMYER YSQKKGWKFD 201: IVDITESDMK GYKEASAAIC GASVYGKLKF ESGIHRVQRI PITEKSGRIH TSAISVAILP QADEVDVQLR NEDLRIDTYR SGGSGGQHAN TTNSAVRIIH 301: LPTGMMVSIQ DERSQHMNRA KALKVLCARL YEIERLRIQS SRSKLRSDQI GSGDRSGRIR TYNFPQGRVT DHRVGITHHA IEDMMQGENL DMFIDALLLR 401: QEMDAIASFS STS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)