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AT2G46440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.984
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cyclic nucleotide-gated channels
Curator
Summary (TAIR10)
Member of Cyclic nucleotide gated channel family. Positive regulator of resistance against avirulent fungal pathogen.
Computational
Description (TAIR10)
cyclic nucleotide-gated channels (CNGC11); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding, cation channel activity; INVOLVED IN: response to fungus; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 12 (TAIR:AT2G46450.1); Has 2962 Blast hits to 2888 proteins in 221 species: Archae - 0; Bacteria - 24; Metazoa - 1476; Fungi - 2; Plants - 940; Viruses - 0; Other Eukaryotes - 520 (source: NCBI BLink).
Protein Annotations
BioGrid:4587eggNOG:ENOG410XPSEeggNOG:KOG0498EMBL:AC006526
EMBL:AK175287EMBL:CP002685EnsemblPlants:AT2G46440EnsemblPlants:AT2G46440.1
entrez:819252Gene3D:2.60.120.10GeneID:819252Genevisible:Q9SKD6
GO:GO:0005249GO:GO:0005886GO:GO:0006952GO:GO:0009617
GO:GO:0009620GO:GO:0016021GO:GO:0030552GO:GO:0030553
GO:GO:0042391GO:GO:0071805Gramene:AT2G46440.1hmmpanther:PTHR10217
hmmpanther:PTHR10217:SF465InParanoid:Q9SKD6InterPro:IPR000595InterPro:IPR005821
InterPro:IPR014710InterPro:IPR018490iPTMnet:Q9SKD6KEGG:ath:AT2G46440
ncoils:CoilOMA:TTRIDEMPaxDb:Q9SKD6Pfam:PF00520
Pfam:Q9SKD6Pfscan:PS50042PhylomeDB:Q9SKD6PIR:H84902
PRIDE:Q9SKD6PRO:PR:Q9SKD6PROSITE:PS50042ProteinModelPortal:Q9SKD6
Proteomes:UP000006548Reactome:R-ATH-2485179Reactome:R-ATH-2514859Reactome:R-ATH-5620916
RefSeq:NP_182167.2SMART:SM00100SMR:Q9SKD6STRING:3702.AT2G46440.1
SUPFAM:SSF51206SUPFAM:SSF81324TAIR:AT2G46440tair10-symbols:ATCNGC11
tair10-symbols:CNGC11TMHMM:TMhelixUniGene:At.19641UniGene:At.36508
UniProt:Q9SKD6
Coordinates (TAIR10) chr2:+:19062082..19064628
Molecular Weight (calculated) 71478.50 Da
IEP (calculated) 9.75
GRAVY (calculated) 0.01
Length 621 amino acids
Sequence (TAIR10)
(BLAST)
001: MNLQRRKFVR LDSTGVDGKL KSVRGRLKKV YGKMKTLENW RKTVLLACVV ALAIDPLFLF IPLIDSQRFC FTFDKTLVAV VCVIRTFIDT FYVIHIIYYL
101: ITETIAPRSQ ASLRGEIVVH SKATLKTRLL FHFIVDIISV LPIPQVVVLT LIPLSASLVS ERILKWIILS QYVPRIIRMY PLYKEVTRAF GTVAESKRVG
201: AALNFFLYML HSYVCGAFWY LSSIERKSTC WRAACARTSD CNLTVTDLLC KRAGSDNIRF LNTSCPLIDP AQITNSTDFD FGMYIDALKS GVLEVKPKDF
301: PRKFVYCFWW GLRNISALGQ NLETSNSAGE IFFAIIICVS GLLLFAVLIG NVQKYLQSST TRVDEMEEKK RDTEKWMSYR EIPEYLKERI RRFEDYKWRR
401: TKGTEEEALL RSLPKDLRLE TKRYLFLKLL KKVPLLQAMD DQLLDALCAR LKTVHYTEKS YIVREGEPVE DMLFIMRGNL ISTTTYGGRT GFFNSVDLIA
501: GDSCGDLLTW ALYSLSSQFP ISSRTVQALT EVEGFVISAD DLKFVATQYR RLHSKQLQHM FRFYSLQWQT WAACFIQAAW KRHCRRKLSK ALREEEGKLH
601: NTLQNDDSGG NKLNLGAAIY A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)