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AT2G34380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.940
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Putative adipose-regulatory protein (Seipin)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Putative adipose-regulatory protein (Seipin); CONTAINS InterPro DOMAIN/s: Adipose-regulatory protein, Seipin (InterPro:IPR009617); BEST Arabidopsis thaliana protein match is: Putative adipose-regulatory protein (Seipin) (TAIR:AT1G29760.1); Has 254 Blast hits to 249 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 27; Plants - 76; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
eggNOG:KOG4200EMBL:AC004077EMBL:AC004481EMBL:AY099671
EMBL:BT000262EMBL:CP002685EnsemblPlants:AT2G34380EnsemblPlants:AT2G34380.1
entrez:818001GeneID:818001GO:GO:0005783GO:GO:0005789
GO:GO:0006629GO:GO:0016021GO:GO:0019915GO:GO:0034389
Gramene:AT2G34380.1hmmpanther:PTHR21212hmmpanther:PTHR21212:SF1HOGENOM:HOG000140967
IntAct:Q8L615InterPro:IPR009617iPTMnet:Q8L615KEGG:ath:AT2G34380
OMA:VSAFMISPfam:PF06775PhylomeDB:Q8L615PIR:T02326
ProteinModelPortal:Q8L615Proteomes:UP000006548RefSeq:NP_850230.1STRING:3702.AT2G34380.1
TAIR:AT2G34380TMHMM:TMhelixUniGene:At.68174UniProt:Q8L615
Coordinates (TAIR10) chr2:+:14512777..14514306
Molecular Weight (calculated) 57418.60 Da
IEP (calculated) 4.74
GRAVY (calculated) -0.09
Length 509 amino acids
Sequence (TAIR10)
(BLAST)
001: MESESESSST HSSCDRFLDA EDEFFYDSFS NHYDCLNSSP PANLRRRRLP MDTDSSSSSS TSSLESCEKR STVGENDELE VSLVDFETIE IDVDVTDSAN
101: SSIDSISEKG EDFEVIDSCT DTEKNMGEND SGRVDPFTVT TLNDERGEIY TGPEYTSTDW SLTSLVIRSI EFQVSLMITF IRFPPWLISK CLSFVFDPYR
201: TMRRGRRYLV SWIVGLCDSG LKDDKPVLEL VRRVTWGLFC AVYVGIMLFA LLVSAFMISG FVITYLAHEP LVIKESLNFD YTKSSPEAYV PISSCAGVAF
301: GLSGKESIET GKVKGLKDRT EITVSMTLPE SEYNRNLGMF QVRVDFLSAS GHVLASSRRP CMVKFSSEPI RLVQTLLKIA PLVTGYVSEI QTLNLKLKGL
401: VEKDIIPTAC LKIMIEQRAE FRPGAGIPEI YDASLFLESK LPFLKRIIWN WRKTLFVWIS MSLFIMELLF ALVFFRPLII PRTGQRTQQR DGTHSINNNL
501: YLDGQAGSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)