suba logo
AT2G30670.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.520
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: tropinone reductase (TAIR:AT2G29330.1); Has 119871 Blast hits to 119645 proteins in 3575 species: Archae - 985; Bacteria - 79072; Metazoa - 5069; Fungi - 6046; Plants - 2494; Viruses - 5; Other Eukaryotes - 26200 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G30670-MONOMEREC:1.1.1.-eggNOG:COG1028eggNOG:KOG0725
EMBL:AC002340EMBL:CP002685EnsemblPlants:AT2G30670EnsemblPlants:AT2G30670.1
entrez:817617Gene3D:3.40.50.720GeneID:817617Genevisible:O49332
GO:GO:0016491Gramene:AT2G30670.1hmmpanther:PTHR24322hmmpanther:PTHR24322:SF623
InterPro:IPR002347InterPro:IPR016040KEGG:ath:AT2G30670KO:K08081
OMA:TFINGHDPANTHER:PTHR24322PaxDb:O49332Pfam:O49332
Pfam:PF00106PhylomeDB:O49332PIR:C84711PRIDE:O49332
PRINTS:PR00080PRINTS:PR00081PRO:PR:O49332ProteinModelPortal:O49332
Proteomes:UP000006548RefSeq:NP_180625.1SMR:O49332STRING:3702.AT2G30670.1
SUPFAM:SSF51735TAIR:AT2G30670UniGene:At.52980UniProt:O49332
Coordinates (TAIR10) chr2:-:13069313..13070904
Molecular Weight (calculated) 28027.50 Da
IEP (calculated) 5.30
GRAVY (calculated) 0.13
Length 262 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKRWSLQGM TALVTGGASG IGHAIVEELA GLGARIYVCD ISETLLNQSL SEWEKKGFQV SGSICDVSSH SERETLMQTV SKMFDGKLNI LVNNVGVVNP
101: KPTIEYVAAD FSFSISTNLE SAYHLSQLSH PLLKASEFGS IIFISSVGGV VSMECGSIYS LTKGALNQLA KTLACEWARD GIRANSVAPN FIYTAMAQPF
201: FKDADYEKSL VSRTPLGRAG EPNEVSSLVA FLCLPAASYI TGQTICVDGG LTVNGFSYKP QA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)