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AT4G22490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: azelaic acid induced 1 (TAIR:AT4G12470.1); Has 708 Blast hits to 702 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 708; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX22eggNOG:ENOG41104D9EMBL:AL033545EMBL:AL161557
EMBL:AY086721EMBL:CP002687EnsemblPlants:AT4G22490EnsemblPlants:AT4G22490.1
entrez:828344GeneID:828344Gramene:AT4G22490.1hmmpanther:PTHR31731
hmmpanther:PTHR31731:SF19InterPro:IPR016140InterPro:IPR027923KEGG:ath:AT4G22490
OMA:PIGFQCPPfam:PF14547PhylomeDB:Q9SUX0PIR:T05443
Proteomes:UP000006548RefSeq:NP_193980.1SMART:SM00499STRING:3702.AT4G22490.1
SUPFAM:SSF47699TAIR:AT4G22490UniGene:At.27428UniGene:At.32531
UniProt:Q9SUX0
Coordinates (TAIR10) chr4:-:11849933..11850295
Molecular Weight (calculated) 12780.80 Da
IEP (calculated) 7.97
GRAVY (calculated) 0.57
Length 120 amino acids
Sequence (TAIR10)
(BLAST)
001: MASKSSTTIS LIIILLISLA EANLLSSPTP TNNFGSCPRN PLQLGVCANV LGLANVTAGD PRARQCCTAL NGLTNVQVTD CLCFIFRPIP LVFGIDVAVR
101: EIFFACNRVF PIGFQCPPPQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)