AT4G22505.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; INVOLVED IN: lipid transport; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT4G22470.1); Has 2123 Blast hits to 2070 proteins in 299 species: Archae - 1; Bacteria - 212; Metazoa - 674; Fungi - 154; Plants - 889; Viruses - 39; Other Eukaryotes - 154 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:11851363..11852955 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 55220.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 12.89 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.87 | ||||||||||||||||||||||||
| Length | 530 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNPKCSKTTL ALFFAFTILL IGHAESNSRP RPRTPPPPRT PRTPSPPPPR TPKTPPPPPP RTPRTPPPPP PRTPRTPPPP PPRTPRTPPT APPRTPPVSP 101: RIPPILPPKT PPTAPPQTPP VSPPKSPPNS PPRAPPLSPP RTPPTSPPRV PPLSPPRTPP TSPPRAPPIP PPRTPSTSPP RAPPLSPPRT PPTSPPRAPP 201: VPPPNTPPTS PPRAPPLSPP RTPPNSPPRT PPTSPPRAPP VPPPRISPTA PPRAPPLSPP RTPPTSPPRT PPLSPPITPP TSPPRAPPLS PPRTPPTSPP 301: RAPPISPPRT PPSSPPRAPP MPPPRTPPTS PPLSPLSPPP RSPPMPPTRT PPVSPPTSPS RTPPVTPPRA PPTAPPQTPP VSPPIVPPNS PPKRPPMSPP 401: ITPPTSPPRA PPQSPPITPP ISPPRAPPTP PGTPSVPPPP RTPPPPPPSG RCPRNGIPLQ ICSTILNMFD GFLGLGTAQP CCSLIRGLSD ADALACLCES 501: VRAPSRSLPR NIINLFMTCG RSIPPGFTCP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)