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AT3G05727.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28818374 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family
Curator
Summary (TAIR10)
Encodes a defensin-like (DEFL) family protein.
Computational
Description (TAIR10)
S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05730.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y65VeggNOG:KOG1075EMBL:AC011620EMBL:AK221765
EMBL:CP002686EnsemblPlants:AT3G05727EnsemblPlants:AT3G05727.1entrez:3768785
GeneID:3768785GO:GO:0005576GO:GO:0031640GO:GO:0050832
Gramene:AT3G05727.1HOGENOM:HOG000130009KEGG:ath:AT3G05727OMA:PCKEKAC
PaxDb:Q56XB0Pfam:Q56XB0PhylomeDB:Q56XB0PRIDE:Q56XB0
PRO:PR:Q56XB0Proteomes:UP000006548RefSeq:NP_001030645.1STRING:3702.AT3G05727.1
TAIR:AT3G05727UniGene:At.32224UniGene:At.51350UniProt:Q56XB0
Coordinates (TAIR10) chr3:+:1693616..1693934
Molecular Weight (calculated) 9148.96 Da
IEP (calculated) 6.97
GRAVY (calculated) -0.21
Length 80 amino acids
Sequence (TAIR10)
(BLAST)
1: MAKTFSSICF TTLLLVVLFI STEIPKSEAH CDHFLGEAPV YPCKEKACKS VCKEHYHHAC KGECEYHGRE VHCHCYGDYH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)