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AT2G14580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : basic pathogenesis-related protein 1
Curator
Summary (TAIR10)
pathogenesis related protein, encodes a basic PR1-like protein. Expresses in flowers, roots, and not in leaves and responses to ethylene and methyl jasmonate. Salicylic acid represses gene expression.
Computational
Description (TAIR10)
basic pathogenesis-related protein 1 (PRB1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to ethylene stimulus, response to jasmonic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: shoot, shoot apex, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: pathogenesis-related gene 1 (TAIR:AT2G14610.1); Has 3181 Blast hits to 3075 proteins in 384 species: Archae - 0; Bacteria - 66; Metazoa - 1736; Fungi - 341; Plants - 911; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2340eggNOG:KOG3017EMBL:AC005398EMBL:AC006067
EMBL:CP002685EnsemblPlants:AT2G14580EnsemblPlants:AT2G14580.1entrez:815945
Gene3D:3.40.33.10GeneID:815945Genevisible:Q9ZNS4GO:GO:0005576
GO:GO:0009611GO:GO:0009617GO:GO:0009723GO:GO:0009751
GO:GO:0009753GO:GO:0009814GO:GO:0080027Gramene:AT2G14580.1
hmmpanther:PTHR10334hmmpanther:PTHR10334:SF223HOGENOM:HOG000036879InParanoid:Q9ZNS4
InterPro:IPR001283InterPro:IPR014044InterPro:IPR018244KEGG:ath:AT2G14580
KO:K13449OMA:QWDEGLAPANTHER:PTHR10334PaxDb:Q9ZNS4
Pfam:PF00188Pfam:Q9ZNS4PhylomeDB:Q9ZNS4PIR:H84518
PRINTS:PR00837PRO:PR:Q9ZNS4PROSITE:PS01009PROSITE:PS01010
ProteinModelPortal:Q9ZNS4Proteomes:UP000006548RefSeq:NP_179064.1scanprosite:PS01009
scanprosite:PS01010SMART:SM00198SMR:Q9ZNS4STRING:3702.AT2G14580.1
SUPFAM:SSF55797TAIR:AT2G14580tair10-symbols:ATPRB1tair10-symbols:PRB1
TMHMM:TMhelixUniGene:At.28524UniProt:Q9ZNS4
Coordinates (TAIR10) chr2:-:6225703..6226188
Molecular Weight (calculated) 17543.70 Da
IEP (calculated) 8.76
GRAVY (calculated) -0.37
Length 161 amino acids
Sequence (TAIR10)
(BLAST)
001: MKVTSYSRIL IILAALVGAL VVPLKAQDSQ QDYVNAHNQA RSQIGVGPMQ WDEGLAAYAR NYANQLKGDC RLVHSRGPYG ENLAKSGGDL SGVAAVNLWV
101: NEKANYNYDT NTCNGVCGHY TQVVWRNSVR LGCAKVRCNN GGTIISCNYD PPGNYANQKP Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)