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AT2G30460.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.836
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide/sugar transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleotide/sugar transporter family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G06890.2); Has 2820 Blast hits to 2813 proteins in 387 species: Archae - 4; Bacteria - 285; Metazoa - 660; Fungi - 411; Plants - 1167; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP1SeggNOG:KOG1441EMBL:AK176166EMBL:AK176178
EMBL:AK176274EMBL:AK221221EMBL:BT002471EMBL:BT008742
EMBL:CP002685EMBL:KP872767EnsemblPlants:AT2G30460EnsemblPlants:AT2G30460.1
EnsemblPlants:AT2G30460.2entrez:817596GeneID:817596GO:GO:0005464
GO:GO:0005794GO:GO:0008643GO:GO:0015790GO:GO:0016021
Gramene:AT2G30460.1Gramene:AT2G30460.2hmmpanther:PTHR11132hmmpanther:PTHR11132:SF98
HOGENOM:HOG000242404InterPro:IPR004853KEGG:ath:AT2G30460KO:K15285
OMA:PQMDENEPfam:PF03151PhylomeDB:Q8GUJ1Proteomes:UP000006548
RefSeq:NP_001154542.1RefSeq:NP_180604.4STRING:3702.AT2G30460.1SUPFAM:0043518
TAIR:AT2G30460TMHMM:TMhelixUniGene:At.38358UniProt:Q8GUJ1
Coordinates (TAIR10) chr2:-:12976449..12978489
Molecular Weight (calculated) 38832.00 Da
IEP (calculated) 8.54
GRAVY (calculated) 0.60
Length 353 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDAQKFQLG TIGALSLSVV SSVSIVICNK ALISTLGFTF ATTLTSWHLL VTFCSLHVAL WMKFFEHKPF DPRAVLGFGV LNGISIGLLN LSLGFNSVGF
101: YQMTKLAIIP CTVVLETIFF RKMFSRKIQF SLVILLLGVG IATVTDLQLN MLGSVLSLLA VITTCVAQIM TNTIQKKYKV SSTQLLYQSC PYQAITLFVT
201: GPFLDGLLTN QNVFAFKYTS QVVFFIVLSC LISVSVNFST FLVIGKTSPV TYQVLGHLKT CLVLAFGYLL LKDAFSWRNI LGILVAVIGM VLYSYYCTLE
301: TQQKATETST QLPQMDENEK DPLVSAENGS GLISDNGVQK QDPVWNSNKD FQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)