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AT2G02910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.495
endoplasmic reticulum 0.340
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF616)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF616); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT1G34550.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
DNASU:814821eggNOG:ENOG410IJI3eggNOG:ENOG410YUZVEMBL:BT030395
EMBL:CP002685EnsemblPlants:AT2G02910EnsemblPlants:AT2G02910.1entrez:814821
GeneID:814821GO:GO:0016021GO:GO:0016757Gramene:AT2G02910.1
hmmpanther:PTHR12956hmmpanther:PTHR12956:SF27HOGENOM:HOG000239482InterPro:IPR006852
KEGG:ath:AT2G02910OMA:VMFVDEQPfam:PF04765PhylomeDB:A4IJ37
Proteomes:UP000006548RefSeq:NP_178393.2STRING:3702.AT2G02910.1TAIR:AT2G02910
TMHMM:TMhelixUniGene:At.41445UniProt:A4IJ37
Coordinates (TAIR10) chr2:-:847335..849371
Molecular Weight (calculated) 53464.90 Da
IEP (calculated) 9.73
GRAVY (calculated) -0.45
Length 460 amino acids
Sequence (TAIR10)
(BLAST)
001: MLPERRSTVF SSSSSYLNPS GHNDNSFLLL RRGKKFGRIV KLKLSHFFLF FVSLFFFSCM FSGHKLLFHG SEFLPHFEQN PYMNSHMLVS SEIDIGLNKS
101: NIERPPGSKK RTKHLPCEVP LAESADRILE PQDYLNFTRF SLGFVETETY DNPRFGGHQT LSERERSYSA VNQTIHCGFV KGTGFDLSEK DRAYMKNCVV
201: SVSSCIFGSS DFLRRPATKK ISEFSKRNVC FVMFVDEQTL SKLASEGHVP DKQGFVGLWK TVVVSNLPYN DMRKTGKVPK FLSHRLFPSS RYSIWLDSKM
301: RLTTDPMLII DFFLWRTKSE FAISNHYDRH CVWDEVLQNK RLNKYNHSAI DEQFMFYRSD GLKKFDPSDP NSPLPSYVPE GSFIVRAHTP MSNLFTCLWF
401: NEVDRFTSRD QLSFAYTYLK LQRLNSDRPL RLNMFKDCER RALTKLFHHR VDSSPPSPPT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)